G92413 (secisbp2l)


Basic Information

Item Value
gene id G92413
gene name secisbp2l
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1351206 ~ 1354977 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109827
ATCTGTGATAAAAGAGTGGCGTTTCCACAGAGGTTGGTTTTCATTACAAGAGTTTAATGGTGTTAATTGGTCAGGAGATGTCATAAAGAGCAcattaaagagtgtgtgtgtgtgtgttttagagaagCTCCTGCAGAAACACAAGCAGCACGACAGAAATCCTTCATATCACCGTTTCACATGAACACCACAGTCACAATCAGTCTGCAATATTTACATAGTGCAAATGAcatggagcacacacacacgaggacAAATCACACTGCGCTGACCAcgacgcaacacacacacacacacacacacacacacacacctgttataCAGagtcgggtgtgtgtgtgtgttaatgttaatcttCAACCAAATAAAGCTGAAACGCCACGAACAGGTGAGTGAAGGCAatcagtaacacacaccaacatcctACAGGAATTATATCAGTtatggtggggaaaaaaaagagaataacagcaaagagaaagaggaaaaacagcacGAGGAGCTTgagggagaggaaaaagagcATAAAATTTAGATGGAGAGAATGAAAAAACAGAACGAgacagaaaaaggagaaaagtaaAAAGAGTAAAGATGGACTGAGTGGGGAGTGTTAAAGCCCCGGAtctgtgattttacacacacacacacacacacacacacacagtgtgactGTCCTCAGAGTGTTTACACATAAAAGCCTAATAACTGCACAATTCCTTCATCTGGTCCCGGCCCTAAAGTCTGAGTCACCACCATGAactatatcattattattattattattattattattattattattactaatattatttCTCGTGTTGATGTTCTGGATGTTTCTGTCTACACACTAAATTATTAGCCTATTAGCCACAAATATAAGCTAATGTATGCTTTAAGTCTACATTCCCCAGTGCTCTCATTACAAGGAATAGTTTATAAATTTACATGGAGACAGTTTTGAATCCAAACAAAATACACGACgagtcatttataaatgtgcGTGGATCATTTAAAGAGTCATTACTGAGTGTTAGAATCTATCGAGGATTTGCAAATAGTTTACAAATGTGAGTGTAGGCAAATCATTTGGGAAGTCCTTGTAACCGAATCAGTAAAAGAGTCATTTACTAAGTGAATCAGTAAAAGAGTCATTTACAATTGTAAGTGAATCAGTAAAAGagtcatttacaaatgtaaagaaTCAATAAAAGAGTCACTTACAAATTTGAGCCAATCACTTGAAGagtcatttacaaatgtaactGAATCACTAGGAGAGTCGTgtttaaatgtatgtatatcacTCAAGGAATCACAGACACATAGGTGAATCACTTAGGCAGTCATTTACACCGAATCACTCCAGGAGTCACATTTAAATCTGACCAGATTCACTAATAAATTTACTCGCCAAATGATTCAGTTGGACACAGAGTGATTTTTAAATCTAAGTGAATCACTTGAGGAGTCGCCATCAGGCAGTATGATGTACGATGACTCTTTACTCTACACCAGAATCAGTTTAAGTGTTTAACTGCAGAACAGAATATAAACAGTTCTTGGTCGTGCACTCAGACTTTCGGACCTGACggtagattttatattttttcctgaAAGTTTTTTACTGATCTACATTCACTATAACACTTACTTTAAAGGGAgtacagagaaacaaaaaaactaaaaaaaaaaaaaaaaaaaaaaaaagcctaaatcTAATTGAAGCAGGAAAGACACACTCACCTGAACACAGGTGACCTGTACAGATCAGTAATAATCACGCTAGGCACGTGCCGATAATCACTCACACGATACGCTACGCTGTTAGCATGGATGCTTCAAACATTCCACTCGATAGGCTGCCTAGGTAGGGAGCAGTGTTGAGATAAAACATGTCATAGATTGATGATGATCGTTGCCATGGTCAcgtgtagctagctaacatcttCCTTAGCTTATGTTACCTCAAACTGTAGCTATTTGACCTTACATACCCAGCTAACAttactagcaagctagctaacataacattaggctagttattatatgttttatgCCAATCACTACATCTGTGGCCAacggtaaataaataaacggaTGAACTGATTTGTgattgtttgaaaaaaaaatgtagctagcACATGACAGGTAATGTAtggaactagctagctagcccaAGTGAATTAGCTAACTGTGTTACTTAAAAAGCGATAATATCGTGAGTTATATCGTGATTATTGTGATTTATCGGCACACGTccagagaaaggagaaaaacacacaggatTTAAAACCAACACCGAGAAAATGTCCATTTTGTTCCGTCGTTATTTAAACACGATAAATAAGAAGCGCATCGTTTATTAGAAACAACCTTTACACGCTATTTACAGATCGATTCGCTTGTTCCGATTAGCGccgcaaacacacactcgagCGTGAATTAACGCACGGTGACAAAAGACGCGACGGTCACAAAACAGTCAGGATATTAACCAGCGAGAGACGAGAGGGTCCCGCTGAGGAACCAATCAGAGTCGAGCTTTTTTAATACATCACAATAATCTGTAATGATTTTAATCTTAaactaatgatgatgatgatgatgatggggtgtgtgtgtgtgtgtgtgtgtgtgtgtaaagtgagttaAGATGTCCAgaaaaatcatcatcattacacacacacacatacacagcatgGACTAAGGAGTGTAATTCATTCAAGTATGGACGgagatggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagctgcatgactacaggaagtgtgtgtggtcCGTCCCCGTCAGTTTCCTGAGATTGTTGTTGTGAGTGATatagcaggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcaatcAGAGTTTTTCTCCATCTGCTTATCCTCGACAGAAGACTCGAGCTCATCCTCTTCATCGCTCACTCCTCTGatctcttcctcgtcGCCGTGTGTTTTGCCGGAGAGCTGCAGGTTCTCCAGCGTGGTGCTCACCCACGTCTCGATCATGCTGCTCAGAGGAGGCACCTCCACCAGGATGGGCTCGGGTGTGTACTCATCCTCCTCTTCGTCGTCTTCGTCCTCGTCCTCCTCATCGTCCTCGCCCAGCGCCCCGGGGACCAGCGTGATGCTGCTGGTGCTGGTGATGGACGAGTACGAGGTGGTCGGACCCCTGCAGCTCCCATCCAGAGACCCCGTCTCCGTGCTCTGCTGAGAAGCTCGCTCCAATCCGTCCTCCGTGCGCCCTTCCTCCTTacaggatgaggaggatgaggcgATTTGGGACGCGGCCGGTGCGCCATCTGCGCTTCCCTCTGCGTCTTTATTCGCGCTCGTTCTGTTAAACTCGTTCTCCAGAGGTTCTAGAGCGTCAGAGTTCTCCACCATCGTCCTCCAGTTcgtc

Function

symbol description
secisbp2l Predicted to enable selenocysteine insertion sequence binding activity. Orthologous to human SECISBP2L (SECIS binding protein 2 like).

NR:

description
PREDICTED: selenocysteine insertion sequence-binding protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109827 True 3457 lncRNA 0.42 5 1351206 1354977

Neighbor

gene id symbol gene type direction distance location
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 36551 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 116580 1227607 ~ 1234626 (-)
bnc1 bnc1,LOC106591559 coding downstream 201409 1125631 ~ 1149797 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding downstream 235152 1103951 ~ 1116054 (-)
LOC113526880 NA coding downstream 265893 1082696 ~ 1085313 (-)
dut dut,LOC102779749 coding upstream 107766 1462743 ~ 1469671 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding upstream 123951 1478928 ~ 1492027 (-)
slc24a5 slc24a5,LOC108412301 coding upstream 211594 1566571 ~ 1586370 (-)
bcl2l10 NA coding upstream 509606 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 526854 1881831 ~ 1904411 (-)
G92415 NA non-coding downstream 6378 1344550 ~ 1344828 (-)
G92421 NA non-coding downstream 9825 1336891 ~ 1341381 (-)
G92412 NA non-coding downstream 55308 1288701 ~ 1295898 (-)
G92294 NA non-coding downstream 134769 1149539 ~ 1216437 (-)
G92359 NA non-coding downstream 335024 1014447 ~ 1016182 (-)
G92459 NA non-coding upstream 56716 1411693 ~ 1413647 (-)
G92463 NA non-coding upstream 61105 1416082 ~ 1416504 (-)
G92488 NA non-coding upstream 137317 1492294 ~ 1510364 (-)
G92496 NA non-coding upstream 180840 1535817 ~ 1632709 (-)
LOC117597535 NA non-coding upstream 184053 1539030 ~ 1541212 (-)
bloc1s6 bloc1s6 other downstream 58713 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 124855 1222721 ~ 1226351 (-)
G92340 NA other downstream 362150 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 504271 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 548994 782910 ~ 802212 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 160761 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 256834 1611811 ~ 1648286 (-)
G92531 NA other upstream 413428 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 640054 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 680964 2035941 ~ 2130790 (-)

Expression


Co-expression Network