G92459


Basic Information

Item Value
gene id G92459
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1411693 ~ 1413647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109888
GGATAGGATGTGTCCTTTAGGGCAATGTGTATCTGAGGAAGGAAACCaggatcatcacacacacacacacacacacacacacatacagtaatgaAGAGGTAaaatcattctttaaaaaatacaactaaAATAATTTTGGTATATGTGTGTCTAaaacgtgtgagtgtgtgtgtgtacctttttcacacactttacatGGTGACCCCCATGCCGCTCCGAGTGTAGCACAGCATTCAGATTTCAGCGTCGCTCCGTTAATGTTCACCTCACACTTACCGTTCACCACCTTCAACCAGCATGTACTCTTACTcgtctctacacacacacacacacacacacacacacacacacacacaggtacaaaCAGTGGAATTACAATTGGATATCGAGGCTAACTGCAGTCAGACGCCCTAATTTACAGCTCCCTAGTTTACAGGTCTCTAAATTACAGGTCCCTAGTTTCCTTTTTACCTAGTTTACAGGTTAATAGTCTACAGGTCcctcatattcttttttttttctttcttcctttcttcttcttcttctttttcttttttttttacctatttaCAGATCACTGATTTGCAGGTCTGTAGTTTCCTTTTTCAccagtttccagtgtcagtgtacAGGTCCCTAGTTTCCTTCTTCCCTAGTTCCCTGTGTCACTAGTTCACAGGCCTCTATACCTTATTTTCTAGTTCCCTTTTTATCTAGTGTCCTTAGTTAACTTTAAGGTCTCTAGATTCCTTTTTACTAGTTTTTAGTGTCCCTAGTTTATAGATCACTAGTTCTCCTAACTCCGTTATTTCCACTCTCCCCAGTTTACAATTGTTAGTTTTAATTCCTCCATAGTTTTTAGGGTCCTCAGTTTACAGGTCTCATCCCTATATTCATTCCTTAGTTTCTGATGTTTTTAGTTTCCAAGTTTCCTGCATTCCTAGTTCACAAGTCCCTAGTTTCCTTCTTTCCTAGTTTCCaggtgtttctttctttcctattATTTAGTGCCCCTAGTGTACTGgtcatttgtttcttttccatTGTTTCTATTGAGTGGAGTTTACAGCTTCGCAGTTTTCCTCGTTTATAATGTTCCAGATTTccatattaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccgatACACTGGGTTCCAGTGGAGTCCAGACTGCTGCCGGTGCCACATTCACAGTTGAAGCTGCCCACAGTGTTCTTACAGTCTCCATTCACACAGGGATTGGACAGACACTCGTCaatatctgcacacacacacgcacacacacacacacacacacacacaagcatgttAATACATACACTACAACAAACACTGGGCTCTAAAGGTTCATTTTATCTAGGTTCTGTAGTGtattctgagtgtgtgtctagGGCTCTGAGTGCTTGGCTGTGTGTTCTGATCCTGGGTTCTGACTGTTGAGGTCTGTTTTCTTTGTGGGTTCTGAGTGTAAGGTTCTAACTCACCCTCACATACTTCAGTCTCAGGCTTGAATTCATAACCTTTGATGCATTGGCAGACGTAGCTGCCTGGAGTGTTCCGGCAGAACCCATTATCACACAGCAACCtgttcctcacacactcatcaatgtctgagtcacacacacacacacacacacacacacacacacacaaacacagacacagtaaCACATAAACAATTCAAAGTGGTTTCTCCATTAACACACCAGAGTAAACAGTGAACTATTAtgcattattacacacacatacacgcacacacacacactctctcacacacacacacacacacacacctacgcaGATTTTCCCCGTCAGGTCCACCTCAAAACCAAGGTTACAGTTACACTTGTAGGTACGCAGCATGTTCTCACACTCTCCGTTTGGACAGATGTCAGGATTCAACGCACATTCGTTaat

Function

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0001501 skeletal system development biological_process
GO:0051216 cartilage development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU109888 True 1925 lncRNA 0.42 2 1411693 1413647

Neighbor

gene id symbol gene type direction distance location
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 97038 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 177067 1227607 ~ 1234626 (-)
bnc1 bnc1,LOC106591559 coding downstream 261896 1125631 ~ 1149797 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding downstream 295639 1103951 ~ 1116054 (-)
LOC113526880 NA coding downstream 326380 1082696 ~ 1085313 (-)
dut dut,LOC102779749 coding upstream 49096 1462743 ~ 1469671 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding upstream 65281 1478928 ~ 1492027 (-)
slc24a5 slc24a5,LOC108412301 coding upstream 152924 1566571 ~ 1586370 (-)
bcl2l10 NA coding upstream 450936 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 468184 1881831 ~ 1904411 (-)
G92413 secisbp2l non-coding downstream 56716 1351206 ~ 1354977 (-)
G92415 NA non-coding downstream 66865 1344550 ~ 1344828 (-)
G92421 NA non-coding downstream 70312 1336891 ~ 1341381 (-)
G92412 NA non-coding downstream 115795 1288701 ~ 1295898 (-)
G92294 NA non-coding downstream 195256 1149539 ~ 1216437 (-)
G92463 NA non-coding upstream 2435 1416082 ~ 1416504 (-)
G92488 NA non-coding upstream 78647 1492294 ~ 1510364 (-)
G92496 NA non-coding upstream 122170 1535817 ~ 1632709 (-)
LOC117597535 NA non-coding upstream 125383 1539030 ~ 1541212 (-)
G92491 myef2 non-coding upstream 130885 1544532 ~ 1559181 (-)
bloc1s6 bloc1s6 other downstream 119200 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 185342 1222721 ~ 1226351 (-)
G92340 NA other downstream 422637 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 564758 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 609481 782910 ~ 802212 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 102091 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 198164 1611811 ~ 1648286 (-)
G92531 NA other upstream 354758 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 581384 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 622294 2035941 ~ 2130790 (-)

Expression


Co-expression Network