G92501


Basic Information

Item Value
gene id G92501
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1597174 ~ 1648953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109962
CTCCGGACAggaatattcacacacacacacacacacacacacacacagtgtcctcTTCACCCCAAATAAAGTAGCTAACAAGCAACGTAAGCtaatagcctccagtttagcgaAGTTcacgcaggtttatattaatgtgctcattctgatatgttatcgtttctatagcagcagcgcattcacagggacgtgtagaGCGAATGCTCGGATTAAAAAATCATCattctggtgaagttttctgtaaggagaaatgtgtttatgtaacatgtatggaaggagtctccagtgtcagcgctttgtaacagtcagaggtaaagctgtaactgtaagttttcagacgtcttcaggacagaggagtttacgcttctttgcggtttctcagtaacatgcggaacaagctgcgattttttttacttattaacgtgaagagagagaataaagaggctggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109962 True 449 lncRNA 0.42 2 1597174 1648953

Neighbor

gene id symbol gene type direction distance location
slc24a5 slc24a5,LOC108412301 coding downstream 10804 1566571 ~ 1586370 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 105147 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 127503 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 282519 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 362548 1227607 ~ 1234626 (-)
bcl2l10 NA coding upstream 215630 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 232878 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 257565 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 338420 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 370904 2019857 ~ 2033455 (-)
G92489 NA non-coding downstream 30672 1565080 ~ 1566502 (-)
G92491 myef2 non-coding downstream 37993 1544532 ~ 1559181 (-)
LOC117597535 NA non-coding downstream 55962 1539030 ~ 1541212 (-)
G92488 NA non-coding downstream 86810 1492294 ~ 1510364 (-)
G92463 NA non-coding downstream 180670 1416082 ~ 1416504 (-)
G92512 NA non-coding upstream 12489 1661442 ~ 1661843 (-)
G92525 NA non-coding upstream 47226 1696179 ~ 1696444 (-)
G92540 NA non-coding upstream 154625 1803578 ~ 1803803 (-)
G92560 NA non-coding upstream 191306 1840259 ~ 1841222 (-)
G92576 NA non-coding upstream 210641 1859594 ~ 1859871 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 66112 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 304681 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 370823 1222721 ~ 1226351 (-)
G92340 NA other downstream 608118 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 750239 835116 ~ 846935 (-)
G92531 NA other upstream 119452 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 346078 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 386988 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 442781 2091734 ~ 2109935 (-)
G93046 NA other upstream 1100435 2749388 ~ 2751169 (-)

Expression


Co-expression Network