G92540


Basic Information

Item Value
gene id G92540
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1803578 ~ 1803803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110013
CAAACTGTGAGCATTTGCACTGGCCCACTTTTGCACATCCTGCACTAATGTACAGTTAatgtctctatttttattttcctaaatttttatatttttatatttgtttaccttatatttattaatattattgttattgtatctATTACTAAGCACCAATACACaaagacaaattccttgtacatgtaaacccacAGTACTTGGTAATAAAGgtgattttgattctgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110013 True 226 lncRNA 0.29 1 1803578 1803803

Neighbor

gene id symbol gene type direction distance location
slc24a5 slc24a5,LOC108412301 coding downstream 217208 1566571 ~ 1586370 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 311551 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 333907 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 488923 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 568952 1227607 ~ 1234626 (-)
bcl2l10 NA coding upstream 60780 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 78028 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 102715 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 183570 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 216054 2019857 ~ 2033455 (-)
G92525 NA non-coding downstream 107134 1696179 ~ 1696444 (-)
G92512 NA non-coding downstream 141735 1661442 ~ 1661843 (-)
G92501 NA non-coding downstream 154625 1597174 ~ 1648953 (-)
G92560 NA non-coding upstream 36456 1840259 ~ 1841222 (-)
G92576 NA non-coding upstream 55791 1859594 ~ 1859871 (-)
G92592 NA non-coding upstream 58146 1861949 ~ 1862414 (-)
LOC117597531 NA non-coding upstream 73162 1876965 ~ 1880573 (-)
LOC117597579 NA non-coding upstream 368071 2171874 ~ 2173454 (-)
G92531 NA other downstream 34783 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 155292 1611811 ~ 1648286 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 272516 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 511085 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 577227 1222721 ~ 1226351 (-)
LOC113534649 LOC108264477 other upstream 191228 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 232138 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 287931 2091734 ~ 2109935 (-)
G93046 NA other upstream 945585 2749388 ~ 2751169 (-)
G93047 NA other upstream 955809 2759612 ~ 2768298 (-)

Expression


Co-expression Network