LOC117597531


Basic Information

Item Value
gene id LOC117597531
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1876965 ~ 1880573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110078
gggcgTCTGCTGTTTGCTGGCTATAACGACTACACTGTAAACATATGGGACGTGTTAAAGGGCACTCGGGTTGCGATCCTGTACGGCCATGAGAACCGGGTCAGTAAAGTCCGAGTGTCACCTGACGGTACCACGTTCTGCTCGGCATCATGGGACGCCACGCTACGGATCTGGGCTTGAGTTGAGTCCTCAGTGAGATTTGGAGCTGATACAAAGATGGATTCACAACAGAccgttttatttttaaatcttttatttagttattaatttCTCTGACACACTCCTCGGTGTGTCTCGTAGCTGATCACTAGATCGTGCGttattgttgtatttgtttgcgaataatttaacattatcTAAAGTCCAGGCTAAGAGAGAAATGTGTATGAGTGACATAAATCAGTTAATGTATACATTATGTAGTATTAAGACATTTATAAATACTAAAAATTAGCATCACCTAGTCAGAAACACCTAAATTATGGTGTATAATCATGAAATGTGG
>XR_004578309.1
CTGCTGTTTGCTGGCTATAACGACTACACTGTAAACATATGGGACGTGTTAAAGGGCACTCGGGTTGCGATCCTGTACGGCCATGAGAACCGGGTCAGTAAAGTCCGAGTGTCACCTGACGGTACCACGTTCTGCTCGGCATCATGGGACGCCACGCTACGGATCTGGGCTTGAGTTGAGTCCTCAGTGAGATTTGGAGCTGATACAAAGATGGATTCACAACAGAccgttttatttttaaatcttttatttagttattaatttCTCTGACACACTCCTCGGTGTGTCTCGTAGCTGATCACTAGATCGTGCGttattgttgtatttgtttgcgaataatttaacattatcTAAAGTCCAGGCTAAGAGAGAAATGTGTATGAGTGACATAAATCAGTTAATGTATACATTATGTAGTATTAAGACATTTATAAATACTAAAAATTAGCATCACCTAGTCAGAAACACCTAAATTATGGTGTATAATCATGAAATGTGGAttcagtaatattaatattaaagtgaTTCACTGGTTAAACATTA

Function

GO:

id name namespace
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110078 False 505 lncRNA 0.41 2 1877009 1880573
XR_004578309.1 True 543 lncRNA 0.38 2 1876965 1880567

Neighbor

gene id symbol gene type direction distance location
bcl2l10 NA coding downstream 920 1864583 ~ 1876045 (-)
slc24a5 slc24a5,LOC108412301 coding downstream 290595 1566571 ~ 1586370 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 384938 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 407294 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 562310 1294052 ~ 1314655 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 1258 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 25945 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 106800 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 139284 2019857 ~ 2033455 (-)
rab27a rab27a,LOC106562223,LOC106587426 coding upstream 718968 2599541 ~ 2623825 (-)
G92592 NA non-coding downstream 14551 1861949 ~ 1862414 (-)
G92576 NA non-coding downstream 17094 1859594 ~ 1859871 (-)
G92560 NA non-coding downstream 35743 1840259 ~ 1841222 (-)
G92540 NA non-coding downstream 73162 1803578 ~ 1803803 (-)
G92525 NA non-coding downstream 180521 1696179 ~ 1696444 (-)
LOC117597579 NA non-coding upstream 291301 2171874 ~ 2173454 (-)
G92763 NA non-coding upstream 343611 2224184 ~ 2224457 (-)
LOC117597578 NA non-coding upstream 359865 2240438 ~ 2260923 (-)
G92782 NA non-coding upstream 421533 2302106 ~ 2302430 (-)
G93023 NA non-coding upstream 707013 2587586 ~ 2606378 (-)
G92531 NA other downstream 108170 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 228679 1611811 ~ 1648286 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 345903 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 584472 1197135 ~ 1292493 (-)
LOC113534649 LOC108264477 other upstream 114458 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 155368 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 211161 2091734 ~ 2109935 (-)
G93046 NA other upstream 868815 2749388 ~ 2751169 (-)
G93047 NA other upstream 879039 2759612 ~ 2768298 (-)

Expression


Co-expression Network