fam214a (fam214a)


Basic Information

Item Value
gene id fam214a
gene name fam214a
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2035941 ~ 2130790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110234
ctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacagagtttattCATATCCTTCTCACTCCTTCTCTTTCCACATCTttcagtttctctctttttttctcttgttttctctttagTTCTCTTTCGatctctttgtgtctcttttcctcttctcttgtTATCgtatttgttttcttcttccttttatttctttgtgtctcatttttggctgtttttctcctctttttccaTCATTGCTTTATATTTTATGCCTCaaactttatctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgaaacctCTGTGCTTCAGTGAGGACTCTGTGTTTTTTGATGCAGTTTTGAAGCTCATCCTCAGAGCTTTGGTGCCgtttgtgaaggaaaaaaaaacaaactgaagtttaaaagaaaaaaaaataaaacgatatggaccatttttttaaatgacagaaaaaaacaacaagcagATGAACAGAATAAAGACTTTGGATAGAGCACTGTGTTTCTCCACCACAACTGGAAAAGGAAATTAGTCATATTCtactatttctcttttttcccttttattttattttgtactgttACCGAACCACTTTAATCGGAAGTGTTGCAATAGAGAAAAAGAATATCTTAACTAGCTTAgtgtttacatatttactttgtcagttatttaatatttaaaatgatatttcattTACTGCACATGTGACGCCTGTCGTGCTCAGCATTATGATGTAGTGCAATATGTTTCAATCATACCGTGTATTTTTGACTAATATTCAGa
>XM_034304997.1
GAGAGAGTGATCTTGGAGAGGTGATCTGAGAGAGTGATCTTGGAGAGGTGATCTTGGAGAGGTGATCTTGGAGAGTGATCTGAGAGAGTGATCTTGGAGAGTGATCTTGGAGGTGTGATCTTGGAGGTGTGATCTTGGAGAGGTGATCTTGGAGAGTGATCTGAGAGGGCTGGAGctgctgatggtgtgtgtatggtcAGGGCTTTGAAGCAGAGACTCACTGAGGTGTTTCAGAGCCAGAGGCTGGAGTGTGCAGACGGAGGAAGGAGCCCAGGAGAGCTGGAGGACGACACACTGGGAAGCATGAAGCCTGAGCGAGAAGCGGCGGAGGAGTTTTTTGAGTACGACGCCGAGGAGTTCCTGGTGTCCCTCACGCTCCTGATCACAGAGGGTCGGACGCCGGAATGTTCCGTGAAAGGCCGAACCGAGGGCCTGCACTGCCCCCCCGCGCAGTCCGGTGGACCGGTCCTCACCAAACACGAATGCAGCGACAAACTGCCTCAGTGCCGTCAGGCGAGGAGGacgaggtcagaggtcatgttGCTATGGCGAAATCACATCCCTATCATGATCGAAGTGATGCTGCTGCCTGACTGTTGCTACAGCGACGAGGGTCTGGCCACAGACCTGAACGATCCGGCGATTAAACAGGACGCTCTGCTGCTGGAGAGATGGACACTACAGCCTGTCCCGAGACAgagTGGGGATCGGTTTATCGAGGAGAAGACGTTGCTGTTGGCCGTACGTTCCTACGTGTTTTTCTCTCAGCTGAGTGCCTGGCTCAGCGCCTCTCATGGCATCGTGCCCAGAAACATCCTCTATAgAATAAGTGCAGCCGATGAAGAGCTGATATGGAATTTCTCCCAGTCGCCCTCGGAGCACGCCTTTCCAGTGCCCAATGTGTCCCACAGCGTAGCGCTGAAGGTGCGGGTTCAGTCGTTGCCCCGCCAGCCCAAGTACCCCGTGTTGAAGTGCAGCATCCACTCCGACCTCTCGTTCCTTGGCAAACGTTCCCTCGACCCTGCGGAGGGGCCGTTAGGAGGTGCATATAGTCGGGGTCAGACTGTCAGTGACCCTCCAAACCCCCTCAGACTCCAGAGTTCACCACTTTTATGCAGATCTCTTCGTTCCCCGTTACCCTCTCATGAAAGAACCAGCCCGTTGAACCAGCGTAAGTGCCCCGAATCGCCCATCCTGCCTGGCAAAGCCGCAAAGCTACTGTTCTCCAGAACTAATGGCGTCTTGGAAAGCTCAGGAAAGACAACGAGTGTGGAGTTGCCGTCATCTTCTTCATCCCCGACACGCGATTTCAAATCACTCTCAAATCCCTCATTTTCAAACCCCAGCCCGGGTCCTCGCTGTTCCTCAGCTGAAACGAACCCCTTGATTGGTTCGCTGCTCCAGGAGAGGCAGGAAGTGATCGCTCGCATCGCGCAGAGGCTGAATTTCTGTGACCCGACATCACCTCATCTTCTTCCTGACGCTCTCTTCACACCTCCAGGGGATGAAGGGCCATTTAAGAAGACCAAAGATCCTCCCAGTCTCCAAACGAATGACAGAAATGGGACAAGGAACGGAGAGTGGAGCCAGACTTCTTTCTTTCAAACTCCATTGAGCCCCAGGAGCCGGACTCGAGTGGACCGAGGTGAACCGGATGAGTCCAGGACTTCACCCAAACCGACGTCCTGTAGGCGGCTTCTGCTGTCGGCTGATTCAAAAGAAGGTTCTATGATCGTTGAAGCTGTTCAGGACATCTCGCGTTTGATTCAGGAGCGTCTTCAGCTGTCGCAAGAGCTCCTGCACGCCAAATACAAACAATGCCGCGAGTCATCAACACCCACATCCTCGCAGAACCAAAACCAGACCCAGAACCATAGACAAAATCAGAATCAAAGCCAGACACAAAACCAGAACCACCAGCTTAGAACCAACAGTCACACTAGCTGTGCTAACGGAACTATAAACATAGCCAATGGAGAAACCAGCTCTAACCTTCGAGTTCACACTGAGACACTTGAGAGACGGGTCTTGTCTGAAAACCAGGGCCGGTCTGGACCTCAGAACAAAGAACCCAGTATCACTAAACCTCAACCACTAACACAAACCAGCCATGCATACAGTGCCAAAAACAATCCCTGGACTTCTTTGCTCAACAGCCCTAAAAGCTCCCACAGCCTGAATGGAGAGGCAGGAATCGACGATATCAACCACCTCCAGGACCTTCAGGACCTCCAGTTTGGGAAGGAAAACCAGGGCAGAAGAGTAGAAACACAGATCCAACCAGAGTCCATCGTGCCTGGTCAGGATGAGGACCAAGATCCCTGGTCCTCCCTTTCCAGCACACCCACCAGCCTTAATACCCAACACTCCCCGAGCCCAGACTGGACTCTCAACAACAACGCACACACCACGTTGCGAAGCCCCGCCTCCTCACAGAAGCCATGCAGTAGTAACTGGAAGAAGCAGAACAGACACTCCATCGATGGTACGGCCACGCGAGCGTTCCACCCCTGCACCGGCCTGCCCCTGCTCTCCAGCCCGATTCCACAGAGGAAGAGTCAGACGGGATATTTTGACTTGGACACGTCTCTGATTCAGTGTAAAGGAGCACCGTGGGCCTCCAGTAAGAGagtgtatttGAAGCGAACTGAAGACTCAGAGGAACCTCAGCAGCTCCTGAGTGCCAGCGCCCCTCCCGCCAGTCTCAGCCTTCTGGGAAACTTTGAggagtgtgtccTAAACTACCGCTTGGAGCCGCTCGGTACTGTCGAGGGTTTCACGGCCGAAGTCGGCGCCAGTGGTTCGTTCTGCCCAAGTCACATGACCTTCCCAGTAGACGTGTCATTCTACAGCGTGTCAGATGATAACGCTCCGTCTCCCTACATGGGGGTCATAAGCCTGGAGTCTCTGGGGAAAAGGGGCTATCGCGTGCCTCCATCAGGAACCATTCAAGTGACCTTATTTAACCCCAATAAGACGGTGGTGAAGATGTTTGTGGTGATGTACGATCTGAGAGAAATGCCAGCCAGCCATCAGACATTCCTGAGGCAGAGGACTTTCTCCGTCCCCGTCAAACGCGAATCAAACGGACAAAACCACAGAAAGCCCCTCCCCCCTGGCCAGGGGCGGACCCTGCGCTACCTCATACACCTGAGGTTCCAGAGCTCCAAATCTGGAAAGATCTACCTCCATCGAGACATCCGGCTTCTGTTTTCACGCAAATCCATGGAAGTGGACAGTGGTGCTGCCTACGAGCTCAAATCCTTCACTGAGTCTCCAGCCGATCCTCCTTTCTCCCCGAGATGCTGATCGACTCGCGTCCCGTCTAACGTCTTGCTCCCACTCCAGCACAGGGGCCTTACTGAagtctgctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacagagtttattCATATCCTTCTCACTCCTTCTCTTTCCACATCTttcagtttctctctttttttctcttgttttctctttagTTCTCTTTCGatctctttgtgtctcttttcctcttctcttgtTATCgtatttgttttcttcttccttttatttctttgtgtctcatttttggctgtttttctcctctttttccaTCATTGCTTTATATTTTATGCCTCaaactttatctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgaaacctCTGTGCTTCAGTGAGGACTCTGTGTTTTTTGATGCAGTTTTGAAGCTCATCCTCAGAGCTTTGGTGCCgtttgtgaaggaaaaaaaaacaaactgaagtttaaaa

Function

symbol description
fam214a Orthologous to human FAM214A (family with sequence similarity 214 member A).

NR:

description
PREDICTED: protein FAM214A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110234 False 868 lncRNA 0.35 2 2035941 2130790
XM_034304997.1 True 3876 mRNA 0.53 12 2036318 2086238

Neighbor

gene id symbol gene type direction distance location
LOC113534648 LOC108264479 coding downstream 2486 2019857 ~ 2033455 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding downstream 43454 1987373 ~ 1992487 (-)
myo5aa myo5a,myo5aa coding downstream 51608 1906518 ~ 1984333 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding downstream 131530 1881831 ~ 1904411 (-)
bcl2l10 NA coding downstream 159896 1864583 ~ 1876045 (-)
rab27a rab27a,LOC106562223,LOC106587426 coding upstream 468751 2599541 ~ 2623825 (-)
ccpg1 ccpg1 coding upstream 509074 2639864 ~ 2656507 (-)
dnaaf4 dyx1c1 coding upstream 528913 2659703 ~ 2670869 (-)
pygo1 pygo1 coding upstream 540160 2670950 ~ 2674690 (-)
prtga prtg coding upstream 550490 2681280 ~ 2722022 (-)
LOC117597531 NA non-coding downstream 155368 1876965 ~ 1880573 (-)
G92592 NA non-coding downstream 173527 1861949 ~ 1862414 (-)
G92576 NA non-coding downstream 176070 1859594 ~ 1859871 (-)
G92560 NA non-coding downstream 194719 1840259 ~ 1841222 (-)
G92540 NA non-coding downstream 232138 1803578 ~ 1803803 (-)
LOC117597579 NA non-coding upstream 41084 2171874 ~ 2173454 (-)
G92763 NA non-coding upstream 93394 2224184 ~ 2224457 (-)
LOC117597578 NA non-coding upstream 109648 2240438 ~ 2260923 (-)
G92782 NA non-coding upstream 171316 2302106 ~ 2302430 (-)
G93023 NA non-coding upstream 456796 2587586 ~ 2606378 (-)
LOC113534649 LOC108264477 other downstream 20976 1995031 ~ 2014965 (-)
G92531 NA other downstream 267146 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 387655 1611811 ~ 1648286 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 504879 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 743448 1197135 ~ 1292493 (-)
G93046 NA other upstream 618598 2749388 ~ 2751169 (-)
G93047 NA other upstream 628822 2759612 ~ 2768298 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 1294928 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 1940010 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 2042498 4173288 ~ 4173594 (-)

Expression


Co-expression Network