G93046


Basic Information

Item Value
gene id G93046
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2749388 ~ 2751169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110620
GTTCATGAATAATTAAGACATATACATATTTGCATGTGATTTAAATGTCAGAACATTTTTCAGAGCTTCGAATTGTTAAATGTTCTgaattctgtaaaaaaaaaaaaaaacaacagaattagTGAACCATTGCCTTCGTTTAGGATCCTGAACATTAATGAGCTTTAAATGAGGGTTTAGCAGTGCTGCGTTTATAAGCTCTCTGCTTGTTCTCATTTGTGCTATTCTCGGCTCCGAGCTGAAAAATGTGACTCAAATCTGCTAGAGAGAGCTGAACAGACTGCATTCCTGATGCTTTGTGGTTTGAGACCCTAATTTCGAGCAAATGTGTGcctgctgtggaaaaaaaaggacacgTTGAGAGCAAAAAGCAAGAAAACCACATCTTCAGTTAAGCCTGTGTCTCCTGCTGGAGAAATACGTTCATTAgtctgcttgtgtttgtgtgttttgacgGTGAAGTACAGAGAGAGCACAGTGCGACGTTTTAACACGTGTTTGCACTGATGTAACACTCGTTTGTGCTGTGAGAGACATTAACAGTACCGACATGTTGAGAAGTTTAGTAGTTGCAGGTAGTTTTTGTCGTGTGTTATGAGGGGAGAAAAACTCGAAACTGGATATTATTTGttccaaaaaaacaagcagctcaggtttctgtgtgtgttcagctctgaaacatttttgctttgcagttttttccagtaaaattatttaatgcGTGTCTCATGTGGAATTTCCACCagcacaaatataaacacagcaaatgtgtgtgactgtgtttaAGCAGCCCGTACTTTTCCTGAGCACTCGTTTACTCGTGTCTCTCCATCTGAGGTGAAATGTGATGCATATCGTGATACATGATGAAAAATCTGATATGagaaataaatttaaagcaGAAAGTGAGTAGAGAGGCTGTTACATTGTGGTACACAGTGATCCAGAATAGAAAAGCCAGTTTACGTTTTAGCTTTCAGGAGGCCATgaagactgacaggcacagaggccacgcctccttcactgagactgacaggcacagagaagctccgcctccttccctgagactgacagacagagaagctccgcctccttccctgagactgacacacagaggccacacctcctttaatgagactgacagagaagccacgcctcctttactgagactgacacacagagaagctccgcctccttccctgagactgacagacagagaagccacgcctccttcactgagtctgacagacagaggccacacctcctttactgagactgacacacagaggccatgcctccttcaatGAGATGGACAGACACCTTTACTTAATCTATAAAAACGCCTATCCTGTCTGTCATCCTATCttccttttattctttctttcctttattctttccttttttatttctattattctttttgtttctttcattttttcttttattttttctgttttcttttgttttctttatattcttctgtccttttctttcctttgtttcttttctttttttttgtttcatttcttccttaattttatttcttcttctatttttattatttgtgttttcttttcttttctttcctgattttttttcttttgtttgttatttcttgtatttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110620 True 1626 TUCP 0.39 3 2749388 2751169

Neighbor

gene id symbol gene type direction distance location
prtga prtg coding downstream 27366 2681280 ~ 2722022 (-)
pygo1 pygo1 coding downstream 74698 2670950 ~ 2674690 (-)
dnaaf4 dyx1c1 coding downstream 78519 2659703 ~ 2670869 (-)
ccpg1 ccpg1 coding downstream 92881 2639864 ~ 2656507 (-)
rab27a rab27a,LOC106562223,LOC106587426 coding downstream 125563 2599541 ~ 2623825 (-)
LOC113534652 NA coding upstream 37693 2788862 ~ 2791363 (-)
pepd pepd coding upstream 48454 2799623 ~ 2860959 (-)
LOC113534544 LOC108264856 coding upstream 297091 3048260 ~ 3053195 (-)
LOC113534536 LOC108264856,LOC108432364 coding upstream 305535 3056704 ~ 3061495 (-)
LOC113534302 LOC108264856,LOC108432364 coding upstream 313501 3064670 ~ 3068301 (-)
G93036 NA non-coding downstream 111387 2637007 ~ 2638001 (-)
G93028 NA non-coding downstream 122665 2625924 ~ 2626723 (-)
G93023 NA non-coding downstream 143010 2587586 ~ 2606378 (-)
G92782 NA non-coding downstream 446958 2302106 ~ 2302430 (-)
LOC117597578 NA non-coding downstream 488465 2240438 ~ 2260923 (-)
LOC113534492 NA non-coding upstream 155158 2906327 ~ 2918822 (-)
G93231 NA non-coding upstream 343539 3094708 ~ 3094939 (-)
G93342 NA non-coding upstream 448217 3199386 ~ 3200701 (-)
G93349 NA non-coding upstream 460422 3211591 ~ 3211804 (-)
G93350 NA non-coding upstream 460699 3211868 ~ 3212123 (-)
fam214a fam214a other downstream 618598 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 639453 2091734 ~ 2109935 (-)
LOC113534649 LOC108264477 other downstream 734423 1995031 ~ 2014965 (-)
G92531 NA other downstream 980593 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 1101102 1611811 ~ 1648286 (-)
G93047 NA other upstream 8443 2759612 ~ 2768298 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 674549 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 1319631 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 1422119 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 1465849 4217018 ~ 4220607 (-)

Expression


Co-expression Network