LOC117597611 (LOC108264121,LOC108264120,LOC108264117)


Basic Information

Item Value
gene id LOC117597611
gene name LOC108264121,LOC108264120,LOC108264117
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4070800 ~ 4073533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU111341
GTATATACCTAATATATTTCATCTGTGTTTTCTGCTCTGTACACAAACAGGCTTTGCATGTAAGCTGCTGGCTAAGTTTGAAATGCAAAGCATGTTGAAGGAAGGAGACATTATGATAGGTGGCATTTTCCCAATTTATTCAAAGCAGGAGAATATACTTTTTTCATTTGATAACAAACCACCAGTGCCAGAATGTAAAGGATTTGGCTTACAAGCCTTTCG
>XM_034305520.1
TATTTCATCTGTGTTTTCTGCTCTGTACACAAACAGGCTTTGCATGTAAGCTGCTGGCTAAGTTTGAAATGCAAAGCATGTTGAAGGAAGGAGACATTATGATAGGTGGCATTTTCCCAATTTATTCAAAGCAGGAGAATATACTTTTTTCATTTGATAACAAACCACCAGTGCCAGAATGTAAAGGATTTGGCTTACAAGCCTTTCGTTGGATGAGGACTATGGTGTTTGCAATAGATGAAATAAATCAAGATGAGCGATTGCTTCCTAACATTTCTCTAGGATATATAATTGTGGACTCTTGTTCCTCTCCTACTAATGTTTTGAGAGCTGCCCTCACTTTGATGAGCACATCAGAGCAAAGGTTCTCTCAATGTCATCCACCTCCCATATTAGCTCTTATAGCTGAATCAGGATCTACCCAGTCTTTAGTTGTGGCTGGGGCTGTTGGACCATTCAAAATACCACTgGTGAGTTATTTTTCAACATGTGCATGTTTGAGTGATAAAACAAAATATCCTACATTTTTCCGAACAATACCAAGTGACTACTACCAAGCAAAGGCTTTGGCTTTCCTTGTCAGACAATATGGATGGACATGGATTGGAGTTATCCAGTCTGACAATGATTATGGACGAAATGGGATATCAGCATTCACAAAGGAAGTGGAGGCTCATGGGGTAAGTGAGCAGttgaaaaaagtacattttgtgGATGCATTTGGAGAGGCAGTGTTCTTTGACAAAAATGGAGACCCCCCTGCCTCATATGAAGTCATAAACTGGCAGATGAGGAAAGAGCAAGTGCAGCATATTGCAGTTGGCTATTTCAGTACCTCTGCAAGTGGAAAATATGTGCTTGTGATTAACAAAGACAAGATTATCTGGAGCACAGGAAATTTGACTCCAAAAGCTGTTTGCTCAGAAATCTGTCCACAAGGTACAAGGAAAGCACAAATTAAAGGTTTACCTCTGTGCTGCTTTGACTGTATCCCATGTGCTGATGGCTCTATATCAAACACAACAGGAGCAACAGATTGCATCAACTGTCCTGAAGAGTACTGGTctaatgaaagaaaagacagcTGCATCATGAAAATAATAGAGTTTCTTTCATATACTGAGACAATGGGGATTGTTCTTATGGTCCTGTCATTATTGGGTGCCTGtttaacattttctactatGGTGGTGTTCATACACTTTAGAGACACACCAATAGTTAAAGCAAATAATTCAGAGCTGAGCTTACTTTTACTTCTTTCCCTTATATTTTGCTTCCTCTGTCCTCTCACATTCATTGGTGAGCTAACAGTCTGGTCCTGCATGTTGCGTCACACAGCATTTGGTATTGCCTTTGCCCTCTGCATTTCCTGTATGCTGGGGAAAACTATAGTTGTGGTAACTGCCTTCAGAGCAACATTACCTGGGAACAATGTGGCAGAAAATTTTGGACCACCTCAACAAAGGGCCattgtgtgttcatgcactGCAGTTCAAATAGTTATTTGCATTCTTTGGCTAAATGTCGCACCACCATTCCCAGATAAAGTCTTTGAGCAAcgcagtaaaaaaaattattttggaaTGTAACACAGGCTCAGATGCTGCATTTTATGCTGTTCTAGGATACATTGGCCTTCTTGCCATAGTTTGCTTGGTCCTGGCCTTTTTAG
>XM_034305521.1
TATTTCATCTGTGTTTTCTGCTCTGTACACAAACAGGCTTTGCATGTAAGCTGCTGGCTAAGTTTGAAATGCAAAGCATGTTGAAGGAAGGAGACATTATGATAGGTGGCATTTTCCCAATTTATTCAAAGCAGGAGAATATACTTTTTTCATTTGATAACAAACCACCAGTGCCAGAATGTAAAGGATTTGGCTTACAAGCCTTTCGTTGGATGAGGACTATGGTGTTTGCAATAGATGAAATAAATCAAGATGAGCGATTGCTTCCTAACATTTCTCTAGGATATATAATTGTGGACTCTTGTTCCTCTCCTACTAATGTTTTGAGAGCTGCCCTCACTTTGATGAGCACATCAGAGCAAAGGTTCTCTCAATGTCATCCACCTCCCATATTAGCTCTTATAGCTGAATCAGGATCTACCCAGTCTTTAGTTGTGGCTGGGGCTGTTGGACCATTCAAAATACCACTgGTGAGTTATTTTTCAACATGTGCATGTTTGAGTGATAAAACAAAATATCCTACATTTTTCCGAACAATACCAAGTGACTACTACCAAGCAAAGGCTTTGGCTTTCCTTGTCAGACAATATGGATGGACATGGATTGGAGTTATCCAGTCTGACAATGATTATGGACGAAATGGGATATCAGCATTCACAAAGGAAGTGGAGGCTCATGGGGTAAGTGAGCAGttgaaaaaagtacattttgtgGATGCATTTGGAGAGGCAGTGTTCTTTGACAAAAATGGAGACCCCCCTGCCTCATATGAAGTCATAAACTGGCAGATGAGGAAAGAGCAAGTGCAGCATATTGCAGTTGGCTATTTCAGTACCTCTGCAAGTGGAAAATATGTGCTTGTGATTAACAAAGACAAGATTATCTGGAGCACAGGAAATTTGGTAGTACAAACATGTTataattaaacacacttttttctttaattccaTTACTCATCTAACATGTGCTCTACTGTCCCAGACTCCAAAAGCTGTTTGCT

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111341 False 222 lncRNA 0.37 2 4073215 4073533
XM_034305520.1 True 1675 mRNA 0.40 6 4070800 4073519
XM_034305521.1 False 1000 mRNA 0.40 4 4071639 4073519

Neighbor

gene id symbol gene type direction distance location
LOC117597563 LOC108264122,LOC108263927,LOC108263928,LOC108437985,LOC108434028,LOC108434080,LOC108263926,LOC108434030 coding downstream 17106 4049740 ~ 4053694 (-)
LOC113534744 LOC108264122,LOC108263927,LOC108263928,LOC108263926,LOC108434028,LOC108437985,LOC108434080,LOC108434030 coding downstream 25330 4041522 ~ 4045470 (-)
LOC113534594 LOC108263928,LOC108264122,LOC108263926,LOC108263927,LOC108437985,LOC108434030,LOC108434028,LOC108434080,LOC108434082 coding downstream 34592 4031091 ~ 4036208 (-)
LOC113534603 LOC108263926,LOC108263927,LOC108264122,LOC108434080,LOC108437985,LOC108434028,LOC108263928,LOC108434077 coding downstream 42405 4025027 ~ 4028395 (-)
LOC113534321 LOC108263927,LOC108437985,LOC108434028,LOC108434080,LOC108434027,LOC108434077,LOC108434030,LOC108434025 coding downstream 60866 4005783 ~ 4009934 (-)
LOC117597564 si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945 coding upstream 1723 4075256 ~ 4076641 (-)
LOC117597565 NA coding upstream 3125 4076658 ~ 4078462 (-)
LOC113534742 LOC108264121,LOC108264120,LOC108264117,LOC108434033 coding upstream 11589 4085122 ~ 4092659 (-)
LOC113534741 LOC108263925,LOC108434083,LOC107730035 coding upstream 20069 4093602 ~ 4100055 (-)
LOC113534597 LOC108263925,LOC108434083,LOC105904798 coding upstream 31694 4105227 ~ 4109059 (-)
LOC113534402 NA non-coding downstream 124424 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 335408 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 489594 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 616429 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 648642 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 81724 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 98540 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 110222 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 157927 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 472906 4546439 ~ 4546705 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 522049 3425718 ~ 3548751 (-)
G93047 NA other downstream 1302502 2759612 ~ 2768298 (-)
G93046 NA other downstream 1319631 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1940010 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 1960865 2091734 ~ 2109935 (-)
G93711 LOC101487076 other upstream 99755 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 143485 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1566163 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1640310 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2123710 6197243 ~ 6281530 (-)

Expression


Co-expression Network