G93753


Basic Information

Item Value
gene id G93753
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4546439 ~ 4546705 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU111413
tctgcatttaacccatccaagtgcacacacagtagtgaacacacacccagagcagtgggcagccttttttgctgcagcgcccggggagcagttgggggttcggtaccttgctcaagggtctcacctcagtcatggtattgagggtggaagagagcgctggtcattcactccccccacctacaatccctgccggacctgagacttgaacccacaaccttcaggttcaccttcgggttgcaagtccgactctctatccattaggccacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111413 True 267 lncRNA 0.56 1 4546439 4546705

Neighbor

gene id symbol gene type direction distance location
LOC113534725 LOC108264094,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264093,LOC108264096,LOC108264097,LOC108264212,LOC108264207 coding downstream 4671 4537081 ~ 4541768 (-)
LOC113534726 LOC108264095,LOC108264205,LOC108264099,LOC108264093,LOC108264096,LOC108264207,LOC108264212,LOC108264097,LOC108264094,LOC108264203 coding downstream 12568 4527208 ~ 4533871 (-)
LOC113534611 LOC108264208,LOC108264094,LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264205,LOC108264093,LOC108264096,LOC108264212 coding downstream 27505 4515183 ~ 4518934 (-)
LOC113534728 LOC108264097,LOC108264095,LOC108264099,LOC108264098,LOC108264205,LOC108264096,LOC108264093,LOC108264212,LOC108264094,LOC108264207 coding downstream 39440 4499062 ~ 4506999 (-)
LOC117597618 NA coding downstream 53700 4492546 ~ 4492739 (-)
LOC113534724 LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264096,LOC108264097,LOC108264207,LOC108264212 coding upstream 5434 4552139 ~ 4557113 (-)
LOC113534723 LOC108264099,LOC108264095,LOC108264205,LOC108264096,LOC108264212,LOC108264097,LOC108264093,LOC108264094,LOC108264203,LOC108264204 coding upstream 11392 4558097 ~ 4562322 (-)
LOC117597542 LOC108264205,LOC108264203,LOC108264208,LOC108264204,LOC108264207,LOC108264095,LOC108264093,LOC108264094,LOC108264097,LOC108264096 coding upstream 22598 4569303 ~ 4577572 (-)
LOC113534722 LOC108264093,LOC108264207,LOC108264095,LOC108264205,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108434099 coding upstream 42481 4589186 ~ 4594035 (-)
LOC113534721 LOC108264207,LOC108264093,LOC108264205,LOC108264095,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108264203 coding upstream 50869 4597574 ~ 4602961 (-)
LOC117597614 NA non-coding downstream 314608 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 362446 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 374127 4172073 ~ 4172312 (-)
G93707 NA non-coding downstream 390942 4155257 ~ 4155497 (-)
LOC113534402 NA non-coding downstream 600063 3944987 ~ 3946376 (-)
G93896 NA non-coding upstream 237220 4783925 ~ 4785131 (-)
G93926 NA non-coding upstream 346881 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 419929 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 460720 5007425 ~ 5011433 (-)
G94010 NA non-coding upstream 529435 5076140 ~ 5179801 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 325832 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 372845 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 472906 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 997688 3425718 ~ 3548751 (-)
G93047 NA other downstream 1778141 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 1092991 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1167138 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1650538 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2599795 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2891386 7438091 ~ 7694427 (-)

Expression


Co-expression Network