G93988


Basic Information

Item Value
gene id G93988
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5007425 ~ 5011433 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU111675
TTTACCATTTTTCAGCAATGATTTGAAAAGACAGAACTTGAAAATGCTGCATAATGAAAAGTACTCTCATACGGATAAACTCCAACATATTTTAATCTCAAATACTAGTTACTGAGTAGTTACAGTAAAAAGCCAGATGttatacaggtgtgtgttctACTAACAATGCAagtctttatatattttcatatgtagtttaaaataaaaatgagtgttTTTTCCACAATCACATCAAAAACATAGTAAAGTTATTGCATGTGAAACTGAGCAACGATTAATAATTGCTACGTAGAGGGTGAAGAATAAAGATTGTCCGATTAGTTGCATAGTGAAGGAGAGGAAAAGTCCACTCAGCGCTCCAAGTGCAACAGTTATGTCCACATCAACCACTCAAAATaatacatgacacacacacacacacacacacataaagcatCAACACAGTAAATAACTTCTTAGCTAACTATGCAAACACGtccctttccttttttcctcacaCAAACTTGTAGTTAATAAACTTCCATATAACATAAAACACTATACTCAACACCAATCCCATATATCCTGGCACAGGACATTAGGAaatctttcttttacttttattttccagtacaatgtaaaaataaaaatagcataGTGCCCCTTACAGGTAAATTAAGAGACAATCCTGCTCCTTGTCCTGGTTAATTTTCCTATATTCTGTATTTCTGAAATATGCAGCTCGCAGACGCTGTAATGTATCACACACTAATGTTCAGTGAAGTGAAGAACTGTGCACCAAACTGTACTGATACGATTTGGGTcttaatgtttttacattttatccgATGGGACTGATGCGACacaggggtccaagcaccagaGGTGGTGTGAAACATGGTGGCGTTAGCACATGAAGGGTGATATCACATCCCCCACCCTCTTTTCAGAGCAAACAGGTTGGTCCACTCAAAGATGGGCCAAGCACGCATACTGTGTGTCCTGGCTATTAGTTTTTCTCATTCATAGTTGcagacaaagaaaacaaaacgatattcatttgattcattacGTTTATACTTAATGCGCTTCACGATGGTGTCTTGCACCACGATGCTGTAACGACAGCACACACTCGTCTTTCTGAATCCCACTATCTGCTGCACTAGTCGAGGAGCAATCTGGCTGACagtagaacatttttttaaaccacgtGGTCCACGTGGAGTCATTTGCGTGCGCAGATGACAGACAGGCCGTGGCGTTTAATTACTGTGCGTTTCACAAACATAGGATTGACGTGACGGGGTCCAAGCACCTGAAGTGGTGCGAAACATGGTGGCGTTAGCACATGATGGGGGAAATCAATATCACAGGATTCCGCCGCCtgttcagaacacacacatcatctacTTTACAACACTCAGGGATGGACAAGCACCTGGTACAAGAAGATCTCATGTCCCAGCtatctgtattttattcatagttgcgaAACCGAGCAAGATAAAAATGTAGCGCAAAGCCCTCAAATAACTCTCCTGCTTACTACACGCAATCACCACATACGTGGTTAAACATAGCGAGAGACACTAGCCAGACTCAGACCTCGTAGCTAAAACGTTCACCAACAACTTGCTGACGTTTTGTCAAGAGCGTGAACATGATGCACTACGTGATCATACATATTCGTTCCCtttgtctgtattaatacatgtattccTCGACTTGTCAGTTTTGGACAATGCTAATTTCAGGGtctaaaaaatgtaaacaaaatccCAAAAGAGCAAATATCATAAAATACACCTTTCAATGCCATGATGAGCGAAGAACCAAAAATCTTCACTATTAAAACACAGTCAATaagggaatttaaaaaaaaacaagcaaaatacAATAGTAGTAAtggtttaaatataaaaaaaagatactggTTTACTGTGTTTTTCCTCACATATCAGTAACATGTAATGCACCTAAaaactacagagaaaaaaaagaaagtaaatactGCTCTCTCCAGGCAGCCGTCTCTCGTTAAAGCGTCGAGTTGTCACTACTAATGTAAAGctttaagtgtaaaataaaaacgcTGGCAGAAGAAAAGAACTTCCTCAGCTTCACACGTGAGAATCACAACAAATGTAAAATACCTGGAGAAGGGTATGTTATGGATTACTGTGTCGACCCATGTGACCCACTTTAGCGCTATGCCCTCCAGGatatcacacaaacactgatttCCATCATGGGGTGGGAAAACCtcatgttatatatatttttttaaatatttggtgACATTCTGGATCTCTATCCTCAGGTTTTGCTCCAAACCTAGATCATTAGGGGCTTGTTTATATTACGGAAGTCAGTTAATTAttagtccagggggtggagatAACTTAgtgttaaatgtgttgttttgacAGGCTtataggaggaggaggagtcaGATCAGATCCTGCTCCACCCCCTGGTTCTccgtttttgaccattttttggctgaaaatttTCCGTGGCTGAAATTTCagtgcatccctaataaatacagTTAACTATTATTAACTAAATGATGTTAGCTAAGCcaaaaatgtagattttatttcacattaatgaactctcAACATTCTCCGTTTACCTTGCAGTGCTTTTTCAAGTGGGAAAATCGAGTCGAGATGAGAGCGCTGGCCAAAACTTTACTTATGTGAGATGgtgggaagggggcggggcttccaggatGTCACTAAATATCaaagagttcaaaacacctacgcaACTGTTAATCGCTCCAGTTTCAAATGTCGAAGAAGACAGCTCCTTTTGCGTAATTTTGGGTGATAACTCATACTAGTGTCCTAGAACTATGCAAAATGTCTGAAAGTTGGCAGGTCTGACAGGACTGGAATTAAACCAGAATAAAATCAGTTACTGTCAAAGATACAGTCGCGGTTTAGCATGAAGATGGTTTGGCCTTATGTTGGATAGAAATTTAGTCTAGTAACCTAAAGATGATCTTAAAGGAACCAGCTTTTTTAACCTAATCTGCACCACATCTGCAGCATCTGGATATTTCCCGTtgcagaaaataaaactaatctaaAAGGGAGTTGTTGGATTTAATAACAAATCAAAACCGAGGCACTTCTGTGTTTACTTTGGGCTACGTTCATTTTCTGAAACAGTAGTCCCATCTCAGAAATGatgaattatacagatttagagtttttatatttataaaaacgTTCTACGAAAGTTGACTCAGTTGTCTTTCCTCAGTACAGTGACACGAATAAGAACTGAAATTCGGTACGCTACAGATGCGGTACACAGAAATCATGCAGAGACGAGCATGCGCGTCGATATTATGCTGACCCTCACACTGTGATCTGCATTAAAAGCtgctttaaataacaaaaaagcgCCAAAATTAAGGATGTCTCCGGTTGTCTGTTGGGAAAACAGGATGCGGATGAGATTAGAGATATCACTTCAGGAACTCGGGAACATTCCGCCGCAGTGTGGTAGAACATCAGGCGGTTCCACAATGCCTCAGTAATGGTTTCCTTCTCAAAGGTGGGATTTCACTTCCTGTAGCATAAGTGCTGAGTGAAAGCCGCATCCTGTTGAGAGAAAAAGCGCTGTGGTAGAGTTCACTGCAGGCAGCAGGACGCGCCATcggaggagcagcagcagatAGAGGAACCCATGGCTTTGGGAGGAATGAGGTCCAGATCCTCGTCGTCAGGGATCTCGTCCAGTCGGTATCCATCTTTCAGCAGCTGTCGGCTCAGATCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111675 True 3779 lncRNA 0.40 2 5007425 5011433

Neighbor

gene id symbol gene type direction distance location
p2ry1 p2ry1,LOC102799884 coding downstream 31161 4973008 ~ 4976264 (-)
LOC113534489 rap2b coding downstream 76705 4928340 ~ 4930720 (-)
LOC113534715 arhgef26,LOC102799329 coding downstream 166391 4785197 ~ 4841034 (-)
LOC113534432 mme,LOC107548962,LOC107695447 coding downstream 330065 4642261 ~ 4677360 (-)
LOC113534774 LOC108263974,LOC108263992,LOC108434102,LOC108437989 coding downstream 372668 4630852 ~ 4634757 (-)
LOC113534806 NA coding upstream 73841 5085274 ~ 5107393 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 343188 5354621 ~ 5372127 (-)
larp6a larp6,LOC107665376 coding upstream 398134 5409567 ~ 5414923 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 558962 5570395 ~ 5583415 (-)
lsm14ab lsm14a coding upstream 633383 5644816 ~ 5658105 (-)
LOC117597587 NA non-coding downstream 35822 4966634 ~ 4971603 (-)
G93926 NA non-coding downstream 113351 4893586 ~ 4894074 (-)
G93896 NA non-coding downstream 222294 4783925 ~ 4785131 (-)
G93753 NA non-coding downstream 460720 4546439 ~ 4546705 (-)
LOC117597614 NA non-coding downstream 775594 4231460 ~ 4231831 (-)
G94010 NA non-coding upstream 64707 5076140 ~ 5179801 (-)
G94045 LOC108264453 non-coding upstream 108595 5120028 ~ 5126327 (-)
G94058 NA non-coding upstream 320641 5332074 ~ 5336409 (-)
G94284 NA non-coding upstream 376669 5388102 ~ 5391848 (-)
G94325 NA non-coding upstream 549122 5560555 ~ 5562406 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 786818 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 833831 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 933892 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1458674 3425718 ~ 3548751 (-)
G93047 NA other downstream 2239127 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 628263 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 702410 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1185810 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2135067 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2426658 7438091 ~ 7694427 (-)

Expression


Co-expression Network