G94045 (LOC108264453)


Basic Information

Item Value
gene id G94045
gene name LOC108264453
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5120028 ~ 5126327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU111741
CTGCAGCTCCAGGCATTCGAGTTAGCTTGGCCAGGTTCTCAGCTTTGCGCACCATCACTTTGATCCGATGGGCCTGAGTCTGGTACTGAAGCAAGACAAAAAGTTGACCCAAGAGCTTTGAAATGCACACAGATGTCATTGTGCCCAAAGACTCCTGGGTACTGTGGCTCTTTTTTTACTCGCCTCCTTGCAGGATTGAGTTGGAGGTTGAATGTGATGGTGGTATCGGGCTCCCAGTCCATCTCACTACAGTTGAGCTCTAGATGACCCAGTGGTGTCTCACGGAGACCTGAGAAATCTTTACCAAACACGGCCAGTCTGAGAGTGCAGGCCCGAAGCTCTTCTACAGATCCGACCTTCAGAGTGAACACCTGAGCCTGAGGCTCTAGGCTGAGGCTGTTTCTGCGTGACGGCACTGCCTGCAGGGTAGCAGGGCACAGTGGGGGCAGACTGGCACGCACCATGGCACCACTGAGCCTCCTGGAGCCCCTGAAGAGACTGAGGATTGTGACAGTGAGGGTGCCATCTGCTGGACAGAACAGCAAGGAGAAGTGAACTGCAGGAGGCTGCTTGTTCGTGAAGGAGCTGCGTCTGGAGCTCGGGCTGGAGCTGCATTGAGATGAAGAGAGCTCCCCCTGCTGGCTGGATGGCGAATACTCAGGGTCAGTACCTGTCAGGAAGCTGTCTCCAATCACCGTTGAGCGACGATCCAGAGCCCGGCGTGTTTTAGAGCCCAGGCTAAGTTTAGGGATACTTGGGAGGGAAGCTCGGCCATGGACAGTCGGTTTAAAGGGAGAACAGGGGACAGCGGGGGTGCTTAGGCGGCGTAAGGCGAATCGAGACTTCTGAGGGCCTTTCAAACTTGTTGAGACCTGTGGGAAACTGCTCTGGTTATCATCAGATGGTGTAAAGCTGCTGGCCTCTGATGGATAATCCAATACGTCACCATCCAACTCTTCATATTGCTGTTTGACTGGAAGAATTTTGATTGAAGGGGACGAGCTGAGAGTCACAGTCACGTGATCTGTAGGTGCGGACTGCAGATAAAACCCCTCCTCTTTAGTGTCAGAAGAGCTAGATTTCCTGCGGCGCCAACAAATGATGCAGCCCAGCACAAGGCCGAAGCAGAAGACGGCCAGACCAACAGCCAGGAGGATCTGTAGATGAACT

Function

NR:

description
PREDICTED: synaptotagmin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111741 True 1170 lncRNA 0.54 2 5120028 5126327

Neighbor

gene id symbol gene type direction distance location
LOC113534806 NA coding downstream 12635 5085274 ~ 5107393 (-)
p2ry1 p2ry1,LOC102799884 coding downstream 143764 4973008 ~ 4976264 (-)
LOC113534489 rap2b coding downstream 189308 4928340 ~ 4930720 (-)
LOC113534715 arhgef26,LOC102799329 coding downstream 278994 4785197 ~ 4841034 (-)
LOC113534432 mme,LOC107548962,LOC107695447 coding downstream 442668 4642261 ~ 4677360 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 228294 5354621 ~ 5372127 (-)
larp6a larp6,LOC107665376 coding upstream 283240 5409567 ~ 5414923 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 444068 5570395 ~ 5583415 (-)
lsm14ab lsm14a coding upstream 518489 5644816 ~ 5658105 (-)
LOC113534713 NA coding upstream 665894 5792221 ~ 5796056 (-)
G93988 NA non-coding downstream 108595 5007425 ~ 5011433 (-)
LOC117597587 NA non-coding downstream 148425 4966634 ~ 4971603 (-)
G93926 NA non-coding downstream 225954 4893586 ~ 4894074 (-)
G93896 NA non-coding downstream 334897 4783925 ~ 4785131 (-)
G93753 NA non-coding downstream 573323 4546439 ~ 4546705 (-)
G94058 NA non-coding upstream 205747 5332074 ~ 5336409 (-)
G94284 NA non-coding upstream 261775 5388102 ~ 5391848 (-)
G94325 NA non-coding upstream 434228 5560555 ~ 5562406 (-)
G94441 NA non-coding upstream 577254 5703581 ~ 5703791 (-)
LOC117597596 NA non-coding upstream 785441 5911768 ~ 5913593 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 899421 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 946434 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1046495 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1571277 3425718 ~ 3548751 (-)
G93047 NA other downstream 2351730 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 513369 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 587516 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1070916 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2020173 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2311764 7438091 ~ 7694427 (-)

Expression


Co-expression Network