G94325


Basic Information

Item Value
gene id G94325
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5560555 ~ 5562406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU112069
TACGGTTAAATGATATGTCCCAACTTCttataacattaaataactttaaaccttttttcgtgtttagataaataaatctactttccttttttatttatgaaatatctAAGGAATCAAAACATTGAATGATACAAAAAGCAGAAGGTGAGATACGCGTTCTGAGAACTACACTTGAGAAACAAAGCTACGGCTCACCGCCGTGTCGGATAGAAGCAGAGAATAAAAGCTAGCGGTGTTTATTTACAGGGAATCTATCTGTGTTCTATCAAATAGTagtacatttttgtattaaGTGTATTAAGACATCGTGGAGAGGATAATAATATGCAGTTCTGTAAAGGTGAAACGACCTTTCTGGGAATGATTTGAGAAAAAATATCAGCGTTGTGTGGAATTCTGAAagtgactcaaaaaaaaaagtcatttctgtgcatttttgaGTGGAATTGTTCACtccacaggaagtgtgtgttagaaatGATGATGTCGAAGACAGGATTGGTTTCAGCCTGCCTGTGTCCACTCAGTAGCGTTACAGCAGGGCTTCTTTATGCATGTGataggccacacacacacacacacacacaaaaccataaCCATGTCATCAggttgagacacacacacacacacacacaaaccataacCATgtcatcacagacacacacacaaaaaaaaacataaccatGTCATCAGGTTGCCATCAGCACTTgcattctgacacacacacacagacacacacacacacagccaagcAAACAGCCACATATAAAGCGGCCCTGCCACTGATGCATGTTGGGAatgttcacatacacacatccatCCTGTGGAGCTCAGGTGAAACCAGCACCTTTGAACTTCAGCAGAACATCAGATCCACTCACAAGCAAAAGAATATCCGAACCGCGATCCTCTCTCCCGTCACAACAGCTGCAACACATCTCCAGCGTGTATCCTCCCAGACAAACCAGTGTTGGGAAAACGTACACTGCATCGGAGTCTAGTACCAGCTCAGAAATGATGCACCGAAGCGCTTGAAGCTCCAGTGACGGAgcacaaaaatggaaaactCTACAttcatgtaaagaaaatgtCTCTGAATATCAATAGGGTTAAATATGATATGTTAAGGCGGTATGTGTGTGTCAAGTTGTGAGTGTGGCTGCTCACATTGACACACAAAatgtaatgtctgtgtgtgtgtgtgtgtgtgtgtgtttagtgtgagcACATTGTAAGGATCTGTATTCCTTACCAgtatcacatcacatcacacatactgtatatatgaatacAAAACCACATACAGATATTAATGGTGCAACTTGAAGgcaatgagtgaaaaaaaaaataataataagtgcgAGATTTTCAGTGAAAGGCCACTTGTAAGGCTTTTCCTTTCTCGGAATGTAGCTGTATATGCTGGTTGTGTCCTGCAAGTGTTAGGGACCAGGGGGTCAAAGTTCGAGTCTGTGACATCATTCCAGGGTGcagctgcagagagagacagaaaaagagacaggaaCTGAGTGTGTTTCCCGTCTGTCTGTGCCTCGTTTCAGTGAAGGTGTGGATGGTTGGAGCAGCAACAAACgtcacacacatctctctccaTGGCGCTgtctggtctgtgtgtgtgtgtgttcacagctCAGTGACATGAAGCGGATAGCTGGCTGGTGGTTGGGAGGGACCAGAAGCTTTTAACCGGTGGAGGTGGCAGGCATGGCACAGCAGGTGACCCTCCAACGGGTAACAGCGGTGGCCCTCTTCATCAGTCAGCTGAAGGCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112069 True 1794 lncRNA 0.43 3 5560555 5562406

Neighbor

gene id symbol gene type direction distance location
larp6a larp6,LOC107665376 coding downstream 145632 5409567 ~ 5414923 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 188428 5354621 ~ 5372127 (-)
LOC113534806 NA coding downstream 453162 5085274 ~ 5107393 (-)
p2ry1 p2ry1,LOC102799884 coding downstream 584291 4973008 ~ 4976264 (-)
LOC113534489 rap2b coding downstream 629835 4928340 ~ 4930720 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 7989 5570395 ~ 5583415 (-)
lsm14ab lsm14a coding upstream 82410 5644816 ~ 5658105 (-)
LOC113534713 NA coding upstream 229815 5792221 ~ 5796056 (-)
LOC113534712 NA coding upstream 243271 5805677 ~ 5807182 (-)
LOC117597570 NA coding upstream 245016 5807422 ~ 5809517 (-)
G94284 NA non-coding downstream 168707 5388102 ~ 5391848 (-)
G94058 NA non-coding downstream 224146 5332074 ~ 5336409 (-)
G94010 NA non-coding downstream 380754 5076140 ~ 5179801 (-)
G94045 LOC108264453 non-coding downstream 434228 5120028 ~ 5126327 (-)
G93988 NA non-coding downstream 549122 5007425 ~ 5011433 (-)
G94441 NA non-coding upstream 141175 5703581 ~ 5703791 (-)
LOC117597596 NA non-coding upstream 349362 5911768 ~ 5913593 (-)
G94607 NA non-coding upstream 462954 6025360 ~ 6029235 (-)
G94608 NA non-coding upstream 466903 6029309 ~ 6030675 (-)
G94728 NA non-coding upstream 668450 6230856 ~ 6231165 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1339948 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1386961 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1487022 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 2011804 3425718 ~ 3548751 (-)
G93047 NA other downstream 2792257 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 77290 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 151437 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 634837 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1584094 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1875685 7438091 ~ 7694427 (-)

Expression


Co-expression Network