G94732


Basic Information

Item Value
gene id G94732
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6238681 ~ 6239748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU112510
GGAATATGCAAGAAGAAATAATCCTCTAGTTCTAAAGGAAAGCACTCTGGTAGTCTACTATCATTACATACATATCCTTCCACTAGCCTCAGAGAACGGATGGCTGTAAGCAGTGTCAGCCATTGCTAGCTAACTTACAGCTCAGAATTACAGTTCTGTTTTCTAGTTTCTGTGTAGCTTATTATCTTACTATATTAATACCTTTCACCCATTTTACTGGAAAAGCCAAACGGGTTGGTTTACTGTTCCATAACAGCAAAGCCACTGAAAGAGGTTTGACGGATGCCAGATCATTTGGTGGTCCACTGGCCACATGCACTGCCGGTGCAAAGCTGCAAAAATGCCTAGTGACATAGCTGCAATGTCATGAGAATGGGATTTGCATTGGGGGAAAACAGAAATGGTCTTGTGGGTGCAAAGCAAGCGTTCCAGGGCAAACAGTCCTCTCGGTTGACCACAAGCATGTGGCAGCTATAGTTCACCCTGGGAAAACAAGACCTCCgctctctgtttatttttcatgtccTTCAGGGGATACGAAGGCCAGGGCGAAAAGTTTCTCAACCCACTGCAGAAATGGCCAGAATTACTCAAGTTGTTCCAAAGTGCTTAGTAATCTTTCTTCTGATAAACTGAGCAATATTGTCCTAATGAATAAGAAGTAATAATTCCAGCCACATACTTTTCTCAAGTGTCATGTAAATCATTCTGTGATTTCCTGCAGAGCCTTTTACATGCTAAAACATGGATTTTAATATCACTGGCACTGCTCCCATTACGGCGCATGACGCCATTGTTGACGGAGGCGTTCCATTTTTCATCACGTTCTCAAAAAATGTGCAGTTTTGTCCTCGTTCTCCCTGCCAACATTGCTGTGTTAGCTTTCCACCCCTTTGGCCTACTTTCTACTGCTTTTCCCTTAAACCTACAATGCAAGGTGACAGCATCTGAGCATCTGAGCACTCTACTATATTAATGAAGCTCACCAGGATTGCAAAGCATCACtgatggaaaagaaagaatgaaagacagaaTTTATAGGGCTTGAAATGGAGGACAAGAGCCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112510 True 1068 lncRNA 0.43 1 6238681 6239748

Neighbor

gene id symbol gene type direction distance location
trnam-cau_19 NA coding downstream 44534 6194075 ~ 6194147 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding downstream 67562 6048476 ~ 6171119 (-)
LOC113534754 LOC108264847 coding downstream 195878 6031416 ~ 6042803 (-)
chst8 LOC108264863,LOC108264314 coding downstream 310383 5924531 ~ 5928298 (-)
LOC117597570 NA coding downstream 429164 5807422 ~ 5809517 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 237204 6476952 ~ 6680208 (-)
trnap-agg NA coding upstream 625520 6865268 ~ 6865339 (-)
ets1 ets1,LOC106581098,LOC106612966 coding upstream 753388 6993136 ~ 7035230 (-)
LOC113534626 LOC108264086,LOC108264449 coding upstream 850225 7089973 ~ 7092426 (-)
LOC113534708 LOC108264086,LOC108264449 coding upstream 871011 7110759 ~ 7113794 (-)
G94730 NA non-coding downstream 5442 6233005 ~ 6233239 (-)
G94728 NA non-coding downstream 7516 6230856 ~ 6231165 (-)
G94608 NA non-coding downstream 208006 6029309 ~ 6030675 (-)
G94607 NA non-coding downstream 209446 6025360 ~ 6029235 (-)
LOC117597596 NA non-coding downstream 325088 5911768 ~ 5913593 (-)
G94733 NA non-coding upstream 453 6240201 ~ 6240526 (-)
G94734 NA non-coding upstream 869 6240617 ~ 6242160 (-)
G94735 NA non-coding upstream 2841 6242589 ~ 6243616 (-)
G94736 NA non-coding upstream 3983 6243731 ~ 6244083 (-)
G94737 NA non-coding upstream 4818 6244566 ~ 6245381 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 452250 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 595732 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 2018074 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 2065087 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 2165148 4070800 ~ 4073533 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 906752 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1198343 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2156064 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 2934907 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 3511134 9750882 ~ 9772020 (-)

Expression


Co-expression Network