G94744


Basic Information

Item Value
gene id G94744
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6258115 ~ 6259032 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU112522
TGTGCTATAGAAAGAGCAGAAATTCACGTTCATAATGGAAGTGATACTTCCGTCTCAgacctctccctttctctccaaCTCTCTGTTCATTTCCATATTGCACAACACAGACACCGAGTCTGTCTGTTTCTTCCCAGCCATCCATCGGCCGACTGGGAAACCACACAACACCTTTGAAGCCGTACTTCTATGTTTCCCTTTGGCTGTTTCTTCCCTTCATCTGTTCTTTGCTTCCATCCTTCACTCCTTACCAACCACAGGAGCAGCAAACAAACCCTCTCTGAACTCCACCAGAGTCCTATTCTAAGTCTTAGTAagcagggaagaaaaaaaatttgaatcaaTCTGAATATTTCAGCAGCCGAATCCTCGAGACACGACCGTCCCAGGTCTCTTGTGTGCATCGTCTGTCCTCCCGCAGTTCATCAGCTCGCTTCATTTGTGGGTAAACGCAGCGTGCGCAAACCTATAATTAGATTCAGGATGCGACACTGTTAACCACTGTAAATAATTACatgagcaaataaataaatatatcatcaAGCAGGCATATGTGAAGGATGTGGGAACGTGATGGAAAGACTTCGCATGACGTTCTTGTGTCAGGAGCAACACTTAATAATGATGCAGTGATAAGGCTGAGCTGGCCTTCAGTGGGAAAATGATCTTATCGTATGTTTCTCAGGGCAGCTGccaaacctacacacacacacaagcacacactagGGCTCATCACACGATAATGAACAGCTATTTAACAGCCAGTAATGACACAGCCTGGGAAGCGCTCTCTGTATTTGTGTGATTAGTGAGAATGCTAATTTGATCTCTAACAGCCTAGATGaccccattttttttcccccggaAGCTCCTCCGGCTTGTTCATATCCTTCTTTGAAACAGTCACAGGTACATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112522 True 918 lncRNA 0.45 1 6258115 6259032

Neighbor

gene id symbol gene type direction distance location
trnam-cau_19 NA coding downstream 63968 6194075 ~ 6194147 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding downstream 86996 6048476 ~ 6171119 (-)
LOC113534754 LOC108264847 coding downstream 215312 6031416 ~ 6042803 (-)
chst8 LOC108264863,LOC108264314 coding downstream 329817 5924531 ~ 5928298 (-)
LOC117597570 NA coding downstream 448598 5807422 ~ 5809517 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 217920 6476952 ~ 6680208 (-)
trnap-agg NA coding upstream 606236 6865268 ~ 6865339 (-)
ets1 ets1,LOC106581098,LOC106612966 coding upstream 734104 6993136 ~ 7035230 (-)
LOC113534626 LOC108264086,LOC108264449 coding upstream 830941 7089973 ~ 7092426 (-)
LOC113534708 LOC108264086,LOC108264449 coding upstream 851727 7110759 ~ 7113794 (-)
G94743 NA non-coding downstream 718 6256918 ~ 6257397 (-)
G94742 NA non-coding downstream 1928 6254913 ~ 6256187 (-)
G94741 NA non-coding downstream 7242 6250005 ~ 6250873 (-)
G94740 NA non-coding downstream 8874 6247937 ~ 6249241 (-)
G94738 NA non-coding downstream 12326 6245527 ~ 6245789 (-)
G94745 NA non-coding upstream 308 6259340 ~ 6260145 (-)
G94746 NA non-coding upstream 4720 6263752 ~ 6267790 (-)
G94761 NA non-coding upstream 126368 6385400 ~ 6386284 (-)
G94975 NA non-coding upstream 405823 6664855 ~ 6669607 (-)
G95072 NA non-coding upstream 742616 7001648 ~ 7002634 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 471684 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 615166 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 2037508 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 2084521 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 2184582 4070800 ~ 4073533 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 887468 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1179059 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2136780 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 2915623 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 3491850 9750882 ~ 9772020 (-)

Expression


Co-expression Network