G95907


Basic Information

Item Value
gene id G95907
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8080216 ~ 8083572 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU113851
TGATCTTTGGACCGATGTGTGAAGGCATGGGAAGAATCTTCTGGCGTTTTTTGCCATCTCCCAGCTCGACATGCTCCACTTCTGGTGTGGTTCTGAAGCCCGAGTAATGGCTGCTCAGAGCTCCCTGTTTCTTCTCGCTGCCTTTCTGAGCTCCTGCTGACTGCTGAACTGCAGCAGAGGCCTTTTTAGGAGATTTCTCCTGAGGCTGCTTATTTCCATCTTCCTGAAATCCAACTTTGTTCACTTTTTTCCTTTTTGGCCCCAGAGTCAGAGGCAGATGTCATTTTGCTCTTCTGCTCCCTCATAGCCTTCAATTTTAACTTCCTCCCATCCTCCAGCGAAAACTCCACAATGGGCCTCTGAGTAGAACACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113851 True 375 lncRNA 0.49 2 8080216 8083572

Neighbor

gene id symbol gene type direction distance location
prrt4 prrt4 coding downstream 19243 8045427 ~ 8060973 (-)
frmd4a frmd4a,si:ch211-220f12.1,LOC107559478 coding downstream 103299 7847835 ~ 7976917 (-)
bend7 bend7 coding downstream 251210 7818508 ~ 7829006 (-)
sephs1 sephs1,LOC107719963,LOC107671154 coding downstream 262619 7810212 ~ 7817597 (-)
mapk8ip2 mapk8ip2 coding downstream 299818 7729088 ~ 7780398 (-)
lepa LOC100304688,LOC108442790 coding upstream 3864 8087436 ~ 8113093 (-)
LOC113534270 cacna2d1,LOC107672590,LOC107738419 coding upstream 409417 8492989 ~ 8594273 (-)
pclob LOC108264083,LOC107738431 coding upstream 524445 8608017 ~ 8687641 (-)
sema3e sema3e,LOC107563409,LOC107559846 coding upstream 619159 8702731 ~ 8742563 (-)
sema3ab sema3a,sema3ab,LOC108264812,LOC107665547,LOC107672583 coding upstream 694420 8777992 ~ 8841060 (-)
LOC117597532 NA non-coding downstream 63595 8014155 ~ 8016621 (-)
LOC117597533 NA non-coding downstream 66804 8009127 ~ 8013412 (-)
G95835 NA non-coding downstream 95286 7984714 ~ 7984930 (-)
G95815 NA non-coding downstream 130254 7949762 ~ 7949962 (-)
G95785 NA non-coding downstream 206902 7872733 ~ 7873314 (-)
LOC113534629 NA non-coding upstream 243259 8326831 ~ 8344658 (-)
G96166 NA non-coding upstream 529243 8612815 ~ 8613014 (-)
G96170 NA non-coding upstream 546328 8629900 ~ 8630123 (-)
G96220 NA non-coding upstream 670986 8754558 ~ 8762596 (-)
G96421 NA non-coding upstream 1000755 9084327 ~ 9086671 (-)
shank3a shank3,shank3a other downstream 385789 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 922728 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 1798686 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 2293785 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 2437267 5639696 ~ 5642949 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 312240 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 1091083 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 1667310 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 1738661 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 2183406 10266978 ~ 10294823 (-)

Expression


Co-expression Network