G96166


Basic Information

Item Value
gene id G96166
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8612815 ~ 8613014 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114151
ggaatagcCAAGACAGGAAATCCTAGTACCCCTCACTGCAGAACAAACAGCCCATGTGGTGAACTCAGACCTGATTCAGCTCCTACTAGCTGAGCCAAGTTGAGCCGAAAGTCCAAGGGGTGAAGACaactcagtgtgtttcaggctgcatAAGTGTATTTAATGTATTGTTTCTTGTTGTGTGCACTATatggtttagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114151 True 200 lncRNA 0.45 1 8612815 8613014

Neighbor

gene id symbol gene type direction distance location
LOC113534270 cacna2d1,LOC107672590,LOC107738419 coding downstream 18542 8492989 ~ 8594273 (-)
lepa LOC100304688,LOC108442790 coding downstream 499722 8087436 ~ 8113093 (-)
prrt4 prrt4 coding downstream 551842 8045427 ~ 8060973 (-)
frmd4a frmd4a,si:ch211-220f12.1,LOC107559478 coding downstream 635898 7847835 ~ 7976917 (-)
bend7 bend7 coding downstream 783809 7818508 ~ 7829006 (-)
sema3e sema3e,LOC107563409,LOC107559846 coding upstream 89717 8702731 ~ 8742563 (-)
sema3ab sema3a,sema3ab,LOC108264812,LOC107665547,LOC107672583 coding upstream 164978 8777992 ~ 8841060 (-)
sema3d sema3d,LOC107563415 coding upstream 273214 8886228 ~ 8925270 (-)
si:ch211-233h19.2 LOC108264231,LOC108444275 coding upstream 436255 9049269 ~ 9075959 (-)
tmem243a LOC108264233 coding upstream 467025 9080039 ~ 9082609 (-)
LOC113534629 NA non-coding downstream 268157 8326831 ~ 8344658 (-)
G95907 NA non-coding downstream 529243 8080216 ~ 8083572 (-)
LOC117597532 NA non-coding downstream 596194 8014155 ~ 8016621 (-)
LOC117597533 NA non-coding downstream 599403 8009127 ~ 8013412 (-)
G95835 NA non-coding downstream 627885 7984714 ~ 7984930 (-)
G96170 NA non-coding upstream 16886 8629900 ~ 8630123 (-)
G96220 NA non-coding upstream 141544 8754558 ~ 8762596 (-)
G96421 NA non-coding upstream 471313 9084327 ~ 9086671 (-)
G96484 NA non-coding upstream 713667 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 804008 9417022 ~ 9417414 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 134478 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 918388 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 1455327 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2331285 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 2826384 5713843 ~ 5786431 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 561641 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 1137868 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 1209219 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1653964 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1914096 10527110 ~ 10581902 (-)

Expression


Co-expression Network