G96840


Basic Information

Item Value
gene id G96840
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9819387 ~ 9884455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114926
ttttttttttttacattaagcacctgtcagtgtttttttttttctctatcttgcTGATTGAGCTTAAGTGGCCTTGCCTTTCAGCTCTCAATAGCACTCTTTCTGCTAATGAATGGATTTAGCTGGTTTTAACCAAGCCTTTTCTAAGCTCCAAGACCCActcatcttttaaaaaaaaaaaaggactgagGGTGTGACTGCACTAGCTGGTGCGATAATGGACCACACATGGACCACGCTAGCCTCCTGTTGCTATGCTCCAAACCACCTCAtcttctcctccctctctgcAGCTGGTGGAGAGCCACAGTTGTTCCTTTATGTGGTTTGTTCACAAAGCTGTCATATTGACAGAGCTGGGCCTGTTTCATTGTCCTTATCGCTGGGGGAGAGGCCCGGTACGGCCCTCCCTTCGTCTTTGTCCCCTCCACCCACTTGTGACAATACGCTACCGGTGAATATCTCCGACATGTTGTTAATGCAGCTTCCCTGGATTTTGCAACGCAACCAGGACAATAGGTTTTATCCCACATTTCGCTGAAGAATGATTCCCAGTTGGAGACgaacattttcctgttttttttttttttttttttacaacctggaCTAACTGGACATTCATGAATGCCAAATTTCTTGTCTAAAGGCCCCTAggaatgatttacaaatgaatttatttgtatccaatgtgataaatgaggcccaatatcAAATACTagaaatatatttcaatttgtatgtaaatgtttcaaGCTTACAGTTTAAAGATGATTAGGTATGAGACTCAGAGCATCACCTGAAGCCCATGCATTACTGAGCTGGCACCAGCCTTCATGTTCCTCCAGCAGAACAATTACACAAATATTCCcggattaaatttttttttcctttgctctGCCAGAACAAAGCCTGTGTTGCTTGTCTGAGCCAAACTTTTAGCTAAAAGCTCCGCCAGTTGGAAAAGAATTTGTTGATGCAACAGTGCTAAACAGGAAGCGCTTGAGCTACTACATGACCATGTTCTTCTGATTGCCTTTCACTTAGTTTCACAGCAAAACTGTAGCCGAACTTCGGAACTGTGTCAGATGCAAAGCTTTGAGGGTCTCCTAACCAAATATAAACCACATTGCACTCATCTAACAATGCACAGCCATAGGTTTGTAAGGGATTGTTTATATGTCATCTGGGTGtattatttttgtgatttttgtatCACTCATACTGAATTTTAGTGTATAAAGTAAACCTAATATATGCCATTGTGTAAAAGAAGCCTGAGATTTCGCGAAGAACGTTGAGCCAGAAATCACTAAATCCTAATGTTCACTTCTCCtatcttttttctgtctttgtttttagTTCAGGTGTTAATATTTGTACATATTGTGTGCGAATATATTACTTGTAATTAACTTTCATGTACTGTAGTCAACCCTACCACTAgctcatgtttttcttctttgtttcaaATCATGAAGAATATTCAGATCATTTCTTTAAGTTTGCTCACTATATTTGAAAGGCATATTATTGGATGTTTAGCAGAGtttaattcttaatttatttccattgtggtatcttgtaaaaaaaaaaaataataaaaataaaccagctGGCACTGTGTTGTATAACCATGTAACAAGTTCATCCAtctattctttctttcagaGCCACTTTTTGTAATCTCAAAGCAAATTGTTGATTATAGTAGGGGGAAAATAGCCAACCTGTTAACTGCCCTACTCAAAATCTCAAtaacataattatattttacaatCAGGCTTACTGgattataataaatgaaaaatgcaagCAATGTGCCGCTATCATTGTTCCTTTGCTTCTCCCTGTAGCTGACCTGACCACAGCCTGTTTCTCCTCCATGAATCGTGGCTCATGATGGATTTAAATGTCTAAGATTGCGTTCAGACCATGCAGTGTGTAGCCATACTCACCATTATGTGTGAAAGTAGTGCATCGTTTCCACCGTCTTTTCCCTCGTTTTTATCACTTGTACAAAATGAAAACCATTAGACATGAGTCTTGCGTGTGTTTGTCTTTCCTCAGGGATTTCAGTCAGCGGGATCATTGCAGAAGATGTGCTTATTGAGCACTGAGAGTTTACTAAATTTCAGaagttttcttattttttttaaactgtgttgtatttgtataaattaTCAATTTGTAGCTTTCCTTTCTTCCCtttttgtaatataaaataaagtatgtGCCAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04022 cGMP-PKG signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU114926 True 2237 lncRNA 0.38 2 9819387 9884455

Neighbor

gene id symbol gene type direction distance location
bicd1a bicd1,LOC107722484 coding downstream 86609 9694077 ~ 9732778 (-)
fgd4a fgd4 coding downstream 127302 9625063 ~ 9692085 (-)
tbxas1 tbxas1 coding downstream 405000 9349891 ~ 9414387 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding downstream 599183 9217244 ~ 9220204 (-)
LOC113534306 LOC108264223 coding downstream 608457 9205345 ~ 9210930 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 113358 9997813 ~ 10018683 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding upstream 411396 10295851 ~ 10398875 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding upstream 541285 10425740 ~ 10439871 (-)
si:dkey-246g23.4 NA coding upstream 564531 10448986 ~ 10453158 (-)
kcng4a kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 coding upstream 592731 10477186 ~ 10505123 (-)
G96677 hipk2 non-coding downstream 315446 9417586 ~ 9503941 (-)
G96679 NA non-coding downstream 401973 9417022 ~ 9417414 (-)
G96484 NA non-coding downstream 480603 9326681 ~ 9338784 (-)
G96421 NA non-coding downstream 732716 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 1056791 8754558 ~ 8762596 (-)
G97054 NA non-coding upstream 187098 10071553 ~ 10095358 (-)
G97172 NA non-coding upstream 484808 10369263 ~ 10370417 (-)
G97173 NA non-coding upstream 486293 10370748 ~ 10371325 (-)
G97204 NA non-coding upstream 594612 10479067 ~ 10479287 (-)
G97224 NA non-coding upstream 634642 10519097 ~ 10519305 (-)
LOC113534661 NA other downstream 47367 9750882 ~ 9772020 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 603572 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 1341050 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 2124960 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2661899 7146500 ~ 7157488 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 382523 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 642655 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1288232 11172687 ~ 11179608 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 1701602 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 1868070 11752525 ~ 11769986 (-)

Expression


Co-expression Network