G101467 (idh2,LOC107714782)


Basic Information

Item Value
gene id G101467
gene name idh2,LOC107714782
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18707918 ~ 18732829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120153
AGAAGACAAAACGAATTTATTAGAAGGTTTCCAAAATGGCCATTCACCTTTGTTTCCAGGTTTAATACAGTATTACATACAGTACttcatatttaaaaactaaaacctTGCGGGTATAAGGACAGTTTGGAATTGGAGTGGACTGATGACACTTACAGTTTAGCTAACACTAGCCAACAGCActgctgcagaaaaaaaacataggtTTCTTTTCAACTTTTCCCTTCAGCAATAATGGTTATGGTTACAATGACATTTAAGTTAAATGAGGTACAAAAAGGAAAAGATGTGCTTCAGTGTCCTCCTCCTTCATTTACCCAGAGCTTTGTCCAGGTTGGTCTTGATTGCATCTAGGAAGTCCGTGGTGTTGACATAGTGCTCATTAAGCTTGACATTTGAGAGCCCATGAATGCAGCCTGCCAGATCCTTGGTCATGACACCATTCTCCACAGTGTCCACACACACTCGTTCCAGAGTCTGAGAAACTTGATCAAATCTGGGTTTCCATCAAGCTTGCCTCTGTGCTCCAGTCCCCTGGTCCAGGCAAAGATGCTCGCAATAGGATTGGTGCTGGTTGGTCTTCCCTTCTGATGCTCACGGTAATGCCTAGTTACTGTGCCATGGGCAGCTTCAGCCTCAATGGTCTTTCCATCAGGGCACACAAGAACAGAGGTCATCAAGCCCAAGGAGCCAACCTTGAGCCAAAATATCAGACTGGACATCTCCATCATAGTTCTTGCAAGCCCAAACAAAAGCACCAGAGGACTTCAACACTTGTGCCACCATGTCATCAATAAGCCTGTGCTCATACCAGATCTTCAGCTTGTCAAACTCAGGCTTGTATTTTCTCGAAGATGTCCTGGAAGATGTCCTTGAAGCGCCCATCATACGCTTTCAAGATGGTATTCTTGGTGCTCATGTATAGAGGCCATTTTTTCTGGATAGCATACTGGAAGCAGCTGTGAGCAAACCCAGTGATGGACTCATCAGTATTGTACATGCCCATTCCACAGCCACCCCCTGGGAAATCGAACACTTCCCACTCCTGGCCTTTGCTTCCATCAGCTGGAATAAAGCTGATCATAAATTTGCCTGGTGTATTCACAACAAAGTCTGTGGCTCTGTACTGTAAACAGGacatataattacataattacatacaaGGTTAAAGAAAGACATCTGTTGTAATTTACTGTCAAAAAAAAGCATGTCCAAGAATAGAACACCTGGTCACCAAAGGCATGTCTGCCAATTGTGATGGGCTGTGTCCAACCAGGAACAAGTCTGGGAATGTTCTTGCAGATGATGGGTTCACGAAAAACTGTGCCACCCAAGATGTTTCTGATGGTTCCATTGggacttttccacattttcttcAACTTGAATTCCTTCGACCCTGGCCTCGTCGGGAGTGATGGTCGCACACTTGACAGCAACATTGTACTTCTTAGTTGCTAAGGCAGAGTCAATGGTGACCTGGTCATCAGTCTGGTCACGGTAGGGGAGGCCCAGGTCAAAGTACTTCAGCTCCATATCAACATTGGACAGGATGAGCTGAGGAGACCAGATGTATGTGAGCAGgagacacaaaaacaacatacaTGCATATGCAAAGTGGCCAAATGTTGTCAACCCTATACATCTATTTGAATTAATTACATCAACCATTGCAAGTAAGCATAAGCAATGCCAATACAATTGTGCTATGTTTATCTCAACATTTGACCTTAATATAGTGCAAACATAAAttctatttaaaagtttaaaccaaaacGAAGGAAAAAATACAGCCTCCTTGACCTGATAAATGCCTCCTACAGCCTGCGCTACTCCCAAACACTGTGTgcttagatttaaaaaacaccAAGATAAACAGACAGCACTTCGCTGAGGACTGAGCTCATAGCAAAAATCTCAATTATCACTTCAGAGATATGGAATTGGCACAGGTTTGAAGAATCAGATGAacaagtttatgtaaaatataatgctgcattacatCTAAGCGGTAACTCACCAGtggaattacatcattttcagcCTCGGCACGTTCGACAGACGAAGTGGAAAAATTGACGCTCCCATGTTcgtattttgttagcaacaagctgtGCAGCTAACTCAGATGATCGATGTATATCTTCTTTCTCAAACAGCGAACTGTATAGTcaaatctaaagctaatacttgtatatacagtataactcattttaaGGTATgaagttttgctttgtttatttctgatattGTGCACaaccatgttgatttgacgttaCTCCGTAATTGGAGAAAGAACTCGGATTTGAGAAGAATACCCCAAGTTGACATTTCACGCCACAAAAGGCATAGTCCCCATTTACTCTGTTGAGGAAGAAGGGTTTAAAGTGCCATCtttagcaaatagtgca
>TU120154
AGAAGACAAAACGAATTTATTAGAAGGTTTCCAAAATGGCCATTCACCTTTGTTTCCAGGTTTAATACAGTATTACATACAGTACttcatatttaaaaactaaaacctTGCGGGTATAAGGACAGTTTGGAATTGGAGTGGACTGATGACACTTACAGTTTAGCTAACACTAGCCAACAGCActgctgcagaaaaaaaacataggtTTCTTTTCAACTTTTCCCTTCAGCAATAATGGTTATGGTTACAATGACATTTAAGTTAAATGAGGTACAAAAAGGAAAAGATGTGCTTCAGTGTCCTCCTCCTTCATTTACCCAGAGCTTTGTCCAGGTTGGTCTTGATTGCATCTAGGAAGTCCGTGGTGTTGACATAGTGCTCATTAAGCTTGACACTGTAAGCCCATGAATGCAGCCTGCCAGATCCTTGGTCATGACACCATTCTCCACAGTGTCCACACACACTCGTTCCAGAGTCTGAGAAAACCTGGGGATAGCAAGGCATTTACAGAATTCacattcaaatgtcaaaactGCTTAAAGACACTGCCTGTGTAATAGGTGATACTGGGTCATGCTCAAAGTATGCACTGGGATTGCAATCCCACAGGACCCAACAAAAACAGTCATGGGTGcaggcagtcagatatgaatCTCACGGGACAAAGAAAGGCATGTTCATTAACATACTGGGTACTAGCATGGGTGCTCGTGagagttttaaattaaaatttaatttaaaccaaagttcattagaaaatgtcacagCCAGGTGCAAACAGAGCTATAGGTGGGTGGGATTGGACAAACTTTGTTCAGATTTGGGTGGGATTGGTTggaattcctttgggagcagATGGGAacgggattaaaaaaaaaaggagcacaGCCCTAGCACATGCTGAAAGTAAACAAAACTAAGAGCTACTGCAATGGACTAAAACCTGTATGGGGTTTTAAAAATAGAACTCAGGAGTTTTAAATAGCTTGTCAGTGAACAAAACGTTTCTGATATGTTAGTAGTTGCTGAAGCAAGAGTTGATTCTGCCATCACAATAGATGACAACAGCATCTTAATTTTGTACTTTACGTAGCCATAACTGACTCACAATTATGTATTGGtaggcattttaaaaataaaaaaaaaataaaaataaaaataaaaaaaagacatctgtATTCAATCATACAATTAAAAAGATGCTTCTGGAGAACAGTTTTTGAATAACTCATTGCCCTTTGCATGTTTTAATAACCTCCACATACTCCTCTGCACCAAAGATTCTCTGTAAATTCTCGCTCATGCAAAAGATCATGCTTTGGATGTTGTATGCTGACTAGTTACTTCACCTCTTCAACTCTGTGGTTACAATTCTATGATCTTGGTATCTCTGATCAtaaggttaaaataaaaataactgtttaATTTGTCTATTCCTTCTCACTAACAGACATCCAACATACTGTAATATCAATTTCAGGAAAGGTTTAAGCCTTCTCGCCTTGAACATGTTTGAGCAGTTTCCCCATCCCTGAGACCCCCAGTGCTCATCTTTGAGTTAAAGTATCAAAACACCAAATGCAAACGTTCTACATCTCTTCATCCCTGCCAGTGTGGATTTCTGCTCTTGCTGGGGAGAAAACTGAAATCCATGAGCGCTCACCACACCAGAATCTCTCAAAACTAACACCACTTGTAATGCTAGGCCTCAGACTCTCATCATCAAGCTGCTGTGCTTGTAGTCTTCGAGACCTTGCAAGAGGGCTTTCCCACATGGAGCTCTACCATGATAAACTGCAGTCTGCAGATGTGTGGCAGGACCATAGACGCATAGATAATTTTCTCATTCACACCCACTGAATAGCCACCTGGACAATGCTACATCATTTTCGTAGTCCAGAATGGACATTTCTACT

Function

symbol description
idh2 Predicted to enable NAD binding activity; isocitrate dehydrogenase (NADP+) activity; and magnesium ion binding activity. Predicted to act upstream of or within glyoxylate cycle; isocitrate metabolic process; and tricarboxylic acid cycle. Is expressed in several structures, including blastoderm; brain; digestive system; pectoral fin bud; and renal system. Human ortholog(s) of this gene implicated in D-2-hydroxyglutaric aciduria 2; acute myeloid leukemia; hepatocellular clear cell carcinoma; intrahepatic cholangiocarcinoma; and lung cancer. Orthologous to human IDH2 (isocitrate dehydrogenase (NADP(+)) 2).

NR:

description
zinc finger and BTB domain-containing protein 17-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120153 True 2408 lncRNA 0.42 8 18707918 18732829
TU120154 False 1916 lncRNA 0.40 2 18730500 18732829

Neighbor

gene id symbol gene type direction distance location
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 183692 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 982598 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1229633 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 1400016 17088641 ~ 17307902 (-)
LOC117597525 NA coding downstream 1763488 16938891 ~ 16944430 (-)
znf710a znf710 coding upstream 1598 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 577059 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 674221 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 1318503 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 1482313 20215142 ~ 20292323 (-)
G101469 NA non-coding downstream 26193 18678731 ~ 18681725 (-)
G101483 NA non-coding downstream 31901 18673464 ~ 18676017 (-)
G101478 NA non-coding downstream 55657 18650442 ~ 18652261 (-)
G101420 NA non-coding downstream 108551 18598851 ~ 18599367 (-)
G101418 NA non-coding downstream 110228 18597480 ~ 18597690 (-)
G101488 NA non-coding upstream 13316 18746145 ~ 18746365 (-)
G101507 NA non-coding upstream 30521 18763350 ~ 18763597 (-)
G101508 NA non-coding upstream 31132 18763961 ~ 18764168 (-)
G101509 NA non-coding upstream 32367 18765196 ~ 18765422 (-)
G101521 NA non-coding upstream 60790 18793619 ~ 18794802 (-)
G101178 NA other downstream 511112 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3350355 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4360910 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5145344 13550680 ~ 13562574 (-)
G98770 NA other downstream 5655607 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 1247240 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1663037 20395866 ~ 20416574 (-)
G102566 NA other upstream 2220773 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 2262512 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 3498619 22231448 ~ 22306769 (-)

Expression


Co-expression Network