G101542


Basic Information

Item Value
gene id G101542
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18802235 ~ 18802651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120232
GGAGTATACTATGgggtgtgtttgtatttggaagtgACGTCAGTCACAGTCGACGGCCAAGAAGGAAAACGTGTAGTCGATTGTGCtgcatggagtgtgtgtaacCGAGCAGTGTGGTGAAaagatcatttttaatttcggGTCAGAAAACAAGATGAGTGACAGTCGCAAACGAAGTAGCATTTGgatgcattttaataacataGACAACATAAAGGCAAGATGTAGAATTTGTAAGGTAAAAATATTATATCGAGCAGGGTCTACTAACAACTTTCACAGGCATATTAGAATTGTACATCCAAATGTGCAcgtttattctttatttgttaTATGGCACAGCAtgttccgtttttttttttggttgtgttttgGGAAGCTCAGTATAAATAAAACGTTGAATACGCATGTGTAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120232 True 417 lncRNA 0.37 1 18802235 18802651

Neighbor

gene id symbol gene type direction distance location
znf710a znf710 coding downstream 60511 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 278009 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1076915 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1323950 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 1494333 17088641 ~ 17307902 (-)
dhx34 dhx34 coding upstream 507237 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 604399 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 1248681 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 1412491 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 1559679 20362330 ~ 20377332 (-)
G101521 NA non-coding downstream 7433 18793619 ~ 18794802 (-)
G101509 NA non-coding downstream 36813 18765196 ~ 18765422 (-)
G101508 NA non-coding downstream 38067 18763961 ~ 18764168 (-)
G101507 NA non-coding downstream 38638 18763350 ~ 18763597 (-)
G101488 NA non-coding downstream 55870 18746145 ~ 18746365 (-)
G101561 NA non-coding upstream 24334 18826985 ~ 18827220 (-)
G101675 NA non-coding upstream 51894 18854545 ~ 18854781 (-)
G101676 NA non-coding upstream 52219 18854870 ~ 18855160 (-)
G101686 NA non-coding upstream 65778 18868429 ~ 18868672 (-)
G101691 NA non-coding upstream 102355 18905006 ~ 18905324 (-)
G101178 NA other downstream 605429 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3444672 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4455227 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5239661 13550680 ~ 13562574 (-)
G98770 NA other downstream 5749924 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 1177418 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1593215 20395866 ~ 20416574 (-)
G102566 NA other upstream 2150951 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 2192690 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 3428797 22231448 ~ 22306769 (-)

Expression


Co-expression Network