G101675


Basic Information

Item Value
gene id G101675
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18854545 ~ 18854781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120366
gtaattttgACAGGTCAAGGTAAAAGGTCATCATCAATCAAATATCTTTCGACAGGTATAGATCAAAGGTCATCAAGAATGTTATGTCTATCTCAGAGGATAATGATGATAGGATCCTACTGAAAATCTAAATGTGGTTTGAACCTCAGATGTTAAAAACGTGTAAATGAatgtcaatcacacacacaaacacaaatacacatacacaacaaaCAATCTGTCAGTGAATGATGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120366 True 237 lncRNA 0.34 1 18854545 18854781

Neighbor

gene id symbol gene type direction distance location
znf710a znf710 coding downstream 112821 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 330319 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1129225 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1376260 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 1546643 17088641 ~ 17307902 (-)
dhx34 dhx34 coding upstream 455107 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 552269 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 1196551 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 1360361 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 1507549 20362330 ~ 20377332 (-)
G101561 NA non-coding downstream 27325 18826985 ~ 18827220 (-)
G101542 NA non-coding downstream 51894 18802235 ~ 18802651 (-)
G101521 NA non-coding downstream 59743 18793619 ~ 18794802 (-)
G101509 NA non-coding downstream 89123 18765196 ~ 18765422 (-)
G101508 NA non-coding downstream 90377 18763961 ~ 18764168 (-)
G101676 NA non-coding upstream 89 18854870 ~ 18855160 (-)
G101686 NA non-coding upstream 13648 18868429 ~ 18868672 (-)
G101691 NA non-coding upstream 50225 18905006 ~ 18905324 (-)
G101692 NA non-coding upstream 50610 18905391 ~ 18905604 (-)
G101698 NA non-coding upstream 91698 18946479 ~ 18946819 (-)
G101178 NA other downstream 657739 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3496982 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4507537 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5291971 13550680 ~ 13562574 (-)
G98770 NA other downstream 5802234 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 1125288 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1541085 20395866 ~ 20416574 (-)
G102566 NA other upstream 2098821 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 2140560 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 3376667 22231448 ~ 22306769 (-)

Expression


Co-expression Network