G103410


Basic Information

Item Value
gene id G103410
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22865924 ~ 22883153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122387
caagGGAGGACCTTGgttaaatccaaaatggccCCCATTTGgaaatatagtgcactacaagCCATTATTGCATGTCATATGTAGTGCACCTACATGGGGAATAGGGACGCATTCAGGGATTCGAATGTGTTGTAGTCCAAATCGGGATGGACTACAAATCCCAGCATGATGTCAGAGATGGCAGCAGAACGACAAACCGCCAATGGCCATGGAGGCATGGTCCAGCACTGGTTTATGGAAGGAGGGTGGAGTCTAGGAGGAGGACAGGGGGAGCCCAAGTAGAGAGAGCCTGTGGTGCACAATGAGGGTGTCACAGTGGTGCCAAAAGCAAGGGAGAATCTGTGACTGAGATGCCATCATAAAGACCTCACCCCTAGCTGAGAAGTCCCTCACCAACTTAAAGGTTGCCAGCAGGCCATCCTCAGCCGGTGCTCAGAGTAAGCCCAATGCAAAGAGGCAAAGTATCTTAATTGGAAACATTGCTTGTCAAGAGTACAGAATTTATAATGGATAAAATGATTAACTAATTTACTAAAACATTATTTCCTTAATTGAACAATgcaaaatagcaaattaaaaatatgataaaataatttgttCTTGTTCACAGATTATGGtttcatgacctcgatttagtatTTGATGGCCATGTTAAATAGTGTGCACAGCGCACAatagaaaagtaaaaataaattaaattacagtagatgcagtgttttttttaacccaagCTTCACATTTTCAGTCACTGTATATATTGGCAGTTTACTACACTCATATTATTATAATGCCTGCCATCTTCTTATTTataataacatactgtatattagtcCTTctttttagttgtttatttttaaatttctttctgctttttttagtccgcattttctatctcttgatttttttttttcaggcttaaaggcaagtgcctGTCTTTAAAGGCAGCAGTCTTAAAAAGCATAAATTCTTTCAGAAGTTTCATAGATTCTccagcattgctttataaataatttaagctatgcttatgaatgtgtaatAAAGGCTCCTAAATGTACCTTTCAAATAGTGTAACCgaataaataatgaagttaTGTCATGTTAttcatgttatatttttaaaattaaaaaaattgcttgTTTACACTTCCCTTTTGCATCAGAAGCTTATGTTAACTTTGTCTTCATCCACGGGTCATCTAATAAACTTCATTTGAACTCTAATGGAATGGTCTTTAAGATGGCACTGAGGATTCATCCGCTGGGAAATGGCAAGGGGAATTTGAAAAGGGAGTGTTAAAAACATTAGACTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122387 True 1312 lncRNA 0.37 5 22865924 22883153

Neighbor

gene id symbol gene type direction distance location
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 524483 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1201597 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1231367 21623853 ~ 21634557 (-)
ppfia1 ppfia1 coding downstream 1291078 21495122 ~ 21574846 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 1373443 21467974 ~ 21492481 (-)
LOC113526884 NA coding upstream 266955 23150108 ~ 23153649 (-)
LOC113526825 LOC108263933 coding upstream 275579 23158732 ~ 23162309 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 414202 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 451024 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 572540 23455693 ~ 23504297 (-)
G103235 NA non-coding downstream 529221 22335946 ~ 22336703 (-)
G103161 NA non-coding downstream 637208 22228385 ~ 22228716 (-)
G103159 NA non-coding downstream 638061 22227628 ~ 22227863 (-)
G103158 NA non-coding downstream 641360 22224329 ~ 22224564 (-)
G103156 LOC107737118 non-coding downstream 641903 22223585 ~ 22224021 (-)
G103436 NA non-coding upstream 45016 22928169 ~ 22936046 (-)
G103576 NA non-coding upstream 335869 23219022 ~ 23259188 (-)
G103600 NA non-coding upstream 379654 23262807 ~ 23263083 (-)
G103702 rps3,LOC107600794 non-coding upstream 386991 23270144 ~ 23275282 (-)
G103719 NA non-coding upstream 438510 23321663 ~ 23323412 (-)
si LOC108264758,LOC108431149 other downstream 559155 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 1852824 20995341 ~ 21013100 (-)
G102566 NA other downstream 1899014 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2449350 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 2885665 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 707792 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 765531 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 849717 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1597149 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1740363 24623516 ~ 24711368 (-)

Expression


Co-expression Network