G103436


Basic Information

Item Value
gene id G103436
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22928169 ~ 22936046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122418
ggaaaattttttaatagttattGAACGTTCTACATCTTACAgtaaatattatacaattaCAAACTTGGCATAATtctgtcactgagatcactaattgatcttccaaaaaaaataaaatataaaaacccataaaaataataaaaacagatttacacTTCATATCACAGGCCTGAAACGGGTCTCGTCGCCTCATAAGAgcattcagttcagttttactGATAGGTATGTAAAACCTGCTACAAAACAGATGAGTATATAATGTATTACCGACATAATGATCAAAATGTTCTTATCCTTAGTGTGTATTTGGAAGACGGTGACTTTTCCCTTCAGTATTCAGTTTTAATAGCAAACGAAAACACAGCAGACTAGGTATATGCTGATAATCAGTTTGATAATAGATCAATAAATTTAAAGCATGTGATAGGTCTTGGACGCATTCAAATTTTGTCACTAGTCAGGAGGAGTCTGCCTAGGCTGTTAGTATTTTTGGGCAGTGTTTGTTCTCCTAAGATAAAATCTTATTTGGAAGGCAGACAAATAAGTTTccttgttttggaaaaaaaaatgaaggtgcATCACGTGTCcttttcagtgaaggaggcaatCCTATGATTCTGTTCTCTTAGTAAGAGGAAACATGAAATGATTGATATAACCTATAATTTTACTACATGCTATAGTGCCCAATCTATAACTAcgtttttattttgacattttcagtaCAGTATGAagaaagcaattttttttttgacttccagactttttttaatggaatgaTCCCCTTTTATGTTCTGGCATCTGATAATATAACAGTACCACAATTTTACTTGAAGCAGGCCGTTATAAAGACAGAAAAGCGACAGAGTGAACGAGAGGAAGAGACCGTTTCAGACCTGTGCTCTGAAATGTCCCTCACACGGTTACGCACCACACTCCTGATCATCTACTTAAGAATAAAAGGAACATCAATCATTAATAAAAACTTAAATAACACTTATGGTAGAAAGCGCAGTAATTACAGGTAAGTGTGGACTCGTTTACTTTCAAACCTAACCAACTTTCATTAGTGTAAAAATGTCAACAAAAACACTTCCAAATCCTACATTTTCGATTTGAGAGGTTCGACCTCTATCTCAGAAGCAACCTCAACCAGTGAACTGTTTAATAACTTTAAATTGCATTGATTGCATTAAGTCTTGCATTACAAATCTGATTTGTTCTAATTATATCAATATTTCACTGCCTGCCATAATACTGTTATTAAGActagatggatagacagattttaatattgaaaaggagaaagtgacagaaagaaagaccaAGGTctatctgaaatatttacagtgcCCTTCAGACATACTAGCCTTCAGaaaataagcaaacaaaatgATATGTATCTTGGTTCTGACAAAATCACTCATTagaactactttttaaaaatagtattcTCTCAAAAATATATGTGGCAAAATTAGTGACACCagaaggaatattttaaataaatgcaaacagtCTCAAAAACTTGGATCACTATGACTCTACGTctctacaagtgtctccaactttgtcagacattacaggaagagactcagtgctATTACTCTCTCCAGACAAGGTGTCACgaaatattaattgtaagggtgctaataattttgaaaccagtatTTTGCACCAATGAATAAAATGGTGtttctgaaaacaaaacatgttgaaataaaggatttgaactcacgatcTCTTGATGATAGCGTGGCGCTTTTGTGTTGCGCCACtctggggtgccaataattctggagggcactgtatATATGAAGTAATTAATACTAGGATTAAACTGCAACACGCTAGTGTTTAGGCcaaatttattttagaatagaaaaaaacacGATGCTTTTATCCACCTACTAAATATAGAGGATTCTAGATGGttctaatgcattttatttaaaagttaagAATTTCATATATCTGTGGTGGTATAAGAAAACTTGTCAGTTGGTGCTATTCACCAGTTGTCCCTATTCAATGGCAAATAGCCAAATAATGACAAcaaagattgttttttttttaatatcttacCAAGACTTTGCTTAAATAATATGCAAACATTCCTCACCAAatgccttttatttatttaccatctAAACCTGTCAGCTAGTGTTAGTAGCATTAGCATCTGCCTGTCGTCTCTCCTGTAGCTTAGCAAGGCTCATTCAGCAACTGTTTGTAAGATCACGGTAGTATAAACAGACAACTTGACTACCTAAGATAACAGAAAACCTAATGGCTGGATAATTACCTATACGTTGTTTGCTTAACTGGAAGGACATGGAGAAAACCGGATTTAATATGGTGCAAACAAGTATCATTTTTCACTACAATGAATTGTTTTTCCTGTCTGTGGTGGCACACGGGTTCATGTGATTGACAGACGTTATAcagagaaataatgaaacacaaacttttcattttaaaaggcTACAACCACTTTGACATTTGTGGGTAGGATGATTAGAAATCTGATTGGGTGAATGAACTTTATACAACCACAGTGGcaatgcatgtaatacattaccttgcataagtatttatcCCCCCCACCCATTTGTAATTATATGCCATCTACACAAAAGAGCCCATGCTACTGAAGCAGGAAAAACTGGTCAAGATTAAGGGCAAAATGGATAgagccaaatacagggcaattcGAGAAGAAAATGCTAGAGACTTGAGACTGGGGCAGAGGTTTAAcctccaacaggacaatgaacCTAAGCCTTCTGCCAAAACTACAGTGGAATGGTTCAGAACtaagaacctgaatgtgttagaatggcccagtcaagCCCAGACCTCAACCTTAATGTcccatccaatctgacagagtTTAAtcaattttgccaagaagaaagggCACGAACATCAGAATCCATTTGGGAAACACTGATCAAAACACACCCCAATAAACCTGCTGCTCTATTTGCAAccaaaggtggttctaccaagtactGACCAAGTGGGTGAATAATTCTGCAACCATCAAATAactgtattttcatttcacaaCCTTTGTgacacaataaaatattttgtacctTCAAATGTTAgatatattgtgtaaatcaaattgTAAAAGtcccaattaaatccatttcaattccaggttgtaatacTACAAAATGGGGTAAAATTCAAGGGGGTTAAATACTTGTGCAAGGCAGTATATACTTCGTCATTGAATGAAAACACAGATGTAAGTACTTTATACACGGGCATTCGAATACTCATCCACAtccctatatatatatgacatttatttatataaatgtcatATATGTATTTGCTTCCTAGTAACCTCAGTCTGAAACCGTTAACTTGCACAGAATATCCTCTCTTATGGAATGTTTAAATGCGCTaaccaacaacaaaacaaagacttttttttttaatttttacatttttgccaGTGAACACGCTTGACATGGCAGATGTTTAGTTATGATTGGGATactgtctcaaaaaaaaaaaaaaaataaaaattgcattctGGAGAATTCTTCTGAAGTAAAGGGTTTTCCTATGCTGCCACACGTGTATGAGGAAAAATGTGGAATTTTTGCAATCAAGTAGTTCAGTTTTAGTCTTGCAcaagttttcttcctctcactctctcctttaCGATAAAGGAATATTTCTCAAAGGCTCTGCTAAAAACTGAGCTCAAGAGCTGAAATCCGCCTGTGTCATTATGTTCCATAAAATCTCTGCGAGTCTTCATATTCAGATTAATATATTTCAAGTAGTGGTTGAGTAGcctaaatgataaatgtgtttacTGAGAATAATATTACTTCCATGACTAGGGATGTGCCGATAATCGATAATATGATAAACCACAATATTCAACACAGATAATCAATGCATTTCCATGCAACGTGACTACCAAGGTAGGCAGCATCTGCGTACTCCCGACATGAAGCCTGTCCTTTTCTTTGATTTAACGTGAGCCCAGCACTGCATACACCTTTCTTGGTGTaggcaatcccataattctgttcaccagaCCAGATTTCCATGAACGTTTCAACAAGCTGTCTCTGTGACTGCGGGGTAAGTTTACAAATTTTCATGTCTTTCTTTCATGTATTTCTGTTCATAGGTTGTCAGAACTCATTGTGTGGTTTTACAGTGATCTCAAAGCTCATGTAGCCACCATATGCAGCTAATTTGCAGTTTAGCCTTAGTTAGCTACCTATGTCAATCTGCTAACAATAATCTAGTTGCACTCATCACCAGAAAAGCAGCTGCTGCTTGTTTGAGATGTTGTTCTTGTTTGTCAGGTTTACTTCCTTAAAATGCTACCAAACAAGACACAAGTTCACTACTGTGGGAGACGCCTTCAGAACAGAAAGcagcaaaaaaatttaaaacatgctTCAGGATAGCGTCAGTGTCCCTGTTTTCCATTTAAGAACATGTGCGCTCCCCATAAGATCAATTTTCTCCCACGAAAGTCCTTCTGTtctatggaaaaacaaaaacatgcttgCCAAAGAGAAGATACaggaaacagttttttttatacacaatatGCAGGGTAGTATTTGTATAGGCTGCCCTAAAAGATCGTCATTCAGAAACTGAATATCGGCACATTCCTAATCAAGCCTAATGGGTACCATAGTATATACTTGTCTTCCTTTAGTAGATCATTAAATAGTGTGTACCGTATATTTGATTATTATGTATCTATGTGTCAATATGCTGATATTATTTCATAAAGTAACTGATATGTACTGTAGTGCGTTCATAGATTACAAGGGACTAGGATTCACAATATTCTCTCTTTCAATGCTGTTACACATCGAGGCAgtttttattattgcatttaaCAAATACTTCTCAAATCCGTGCAGCAAGGCCTCAGGGCCCGAGTGTTCACAGAGGACGAGGGGATTTCTCAAATAGCCATCTTTATGCCCTTTTTTCTATGTCCTACTTGTTCttaccctacattcacactaggaAGTGACAAAGCGAGCAGTCATTTCCCGTGGCAGCGCACAACTACAATTTCAACATGGACTGCCTGCACGAAGGAAGGTGCACCTTCGAGTCCATATACGGACATGCAGTGGGATCATATGAGGAAATATGAGTGGCTTGAAGGCCATGAAAATGTGgacaagtcactgagatcatatatGAAAATGGGAGTGGATTTGAGTGTTGCTGCGTTCCACTCAACTCTGAAGTAGGAATTATATCATTTTTGACCTTCGCACATTCGGGATACAAGGCAGAggaaaaaatcatattttgtttgctctgtccaAAACCTCATGAACTAATGaaaagctagccagctaacatcaGTGATAACTTTAATGTTCATGATGTATTTGCAGTACCTTCTCAAAACAACACTGGATGGCCAGTGTGATACAgttatgtctgtatgttgactgatctaaagcaaatacgaCTGTAATcgcatttaaaagtagagaagcgGTCCCTTATTTACTGGTGAGAGTGTGCAGAGCCATGTTGATGTgtcattttgtttggtttttctAGTCGGAGGTCAGAAATTCTGAAGGCCATAAATGGGAATGTGAGTGTGTCATTGAGTCCATTTATGAAGGTCTTCATATCAGAAGATGGAGGTCATTGGCAGTCACATATGCGCATGCATGCTCACAGGCtttgttagccagctagccatTATAAAATCCTCTCAGTTATCCTCTGAGAAATTTTTACTACTTTTGAGATTTATGATTATACATTTGAGTTTCtacaaaagaaaattaaattgtatttctGATGACTTGTATGGGCtaaaagacacacccatctgtcccacCTAAAGACCTGCCCATTGGTCTACATCCAGTATACAGACCCTGCTCTCCAATTCTGGCACAGTGACAATCAAAACATGAATTTCTCAACTCTCTATAATGTTGGATAGTCAATGTTTGATATTAACAATTTGTTAATGAGTGTCATTTAAAACAATAGAAATAGGaagatattaaattatatattttttaaaaaagcaaatggGTATCAGATTAACAATATCCTATAAAAAACACTTTCTACTGGAACACTAAAAAACTGTCGAGTGCATGCCAACAAGCCAAAAACTGGGCTAATAATTTGTCACCTTTTAATGTGAACGCAGGGTTATTCTACTACTTACCGCCATCATTACTGCTTTATTCAAAATGCTGAATAATGCATGATACAAATTCCTTTAAATCCATTTGGTAAATGCAAAAcacatcaacaaaacaaaaacgcaACAACAAATTCAGAACCACATAAATATCAGCTCAAAACATCAAGGGGAGATCATTACTGAACATCACAAACTTGTTGCTGAAAACACTGTTTAATGCAAAGTTACTTAAGTTACTATAGTGAGGAGTAATTCTTTCTTCTGAACAACCAGGCTTCCTCTaaggtatgtatgtatgtatgtatgtatgtatgtatttatttatttatttattgcatttgcaTACTCATTTTAAAGTTGACAGCATATCATATGAGAACACTTGGTAAAAATAAGTATGAACAAACGCATCAGTAGATTCATTTACTCTTGTATTTCCTCTTACTGTAAAAATCCAGCTCTCTGTTTTCTGCTGACTCTCAGAATGATGTGCGCTGTAGCCGACCAGCGACATGCATGTGATGTTCAAGAAGGACCTTCCCTTTAAGTAACGCTGATGAgatttctgatttgctgttgtgtttgctgattttctgttcagtttttggtttgttaatgttgttCATATTTACCGTCCACCATAATTTGGAGACCCTGAATATTAAATCAGGACCCTGTCGAACCCAGACGTCCTCTGTCTTGGCACGTATTCTGCACTAAGATGAAATCTGACCCCAATCCGTCATCCTAAGTGCCATTTTCACATCACTTGCCTCCACAGAGACTGTGTGTTGGCAGGTGTTTCAGCGTGTATGTGCAATTGCAAAAATAAGTATTTGCAAGAGCACATCTCTGCACATCACATGCATCTATAGAAATATATTATGCACGCCATAATTTAGAAGCTTACTCTATCCAGATGAtccaataaataaagaaaccagAGTCCTCTACTAAGTGAATAACTGAGATTAGTGTAAGCACTCGACATCCTAATGATGTTTGAACCATGTCGAGCTGCCCTACGCACTGCTAAACTTATTACaaatgtacctaataaactgctACAAGCTGGAAGACACCCTTGTTATCAATGCTAGAAAGATGAACAGAAGAAAGTTGTGTGAAATCAAAACTGAAAAGCAGAAACCCGTCTCAGCCCTTCTGAAAAGGGAATCTGAAAATTACAAATCTAcacaaatgtaaagaaaaaccctGCACTACTATCTAAACCTTATAATATTTGGCATGACAGACATGATGATGAGCATGGTGCAATGTACATTCCCACTCAAGGGTGGAAATatggaacaacaacaacaataacaacataaaaaagCACATTGTTTCAAAGTCGTAACTGGTCAAAATCATTCTGGAGTTTCTGCAGGAGTTGATTGTTAATTTAAATTgtcgatttaaaaaaaaaaaaaaatgcaacaacatAGGTCAGGAATAGTAAGACTAAAACACAagaggaaattaaataaaaaaaaaatagagggaaaaaattaaataaaaaaataaaaagcagctttTACAAAATGACGTAAGAATGCATAAAGTGacccttttttcttctgttctgGCAGACGTGGCTGCTGATCACAGAGAGCCCGTGTAACACTTGAGGATTTTGCATACGACGTTTAACTCCAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122418 True 7857 lncRNA 0.36 2 22928169 22936046

Neighbor

gene id symbol gene type direction distance location
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 586728 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1263842 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1293612 21623853 ~ 21634557 (-)
ppfia1 ppfia1 coding downstream 1353323 21495122 ~ 21574846 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 1435688 21467974 ~ 21492481 (-)
LOC113526884 NA coding upstream 214062 23150108 ~ 23153649 (-)
LOC113526825 LOC108263933 coding upstream 222686 23158732 ~ 23162309 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 361309 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 398131 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 519647 23455693 ~ 23504297 (-)
G103410 NA non-coding downstream 45016 22865924 ~ 22883153 (-)
G103235 NA non-coding downstream 591466 22335946 ~ 22336703 (-)
G103161 NA non-coding downstream 699453 22228385 ~ 22228716 (-)
G103159 NA non-coding downstream 700306 22227628 ~ 22227863 (-)
G103158 NA non-coding downstream 703605 22224329 ~ 22224564 (-)
G103576 NA non-coding upstream 282976 23219022 ~ 23259188 (-)
G103600 NA non-coding upstream 326761 23262807 ~ 23263083 (-)
G103702 rps3,LOC107600794 non-coding upstream 334098 23270144 ~ 23275282 (-)
G103719 NA non-coding upstream 385617 23321663 ~ 23323412 (-)
G103727 NA non-coding upstream 393630 23329676 ~ 23330101 (-)
si LOC108264758,LOC108431149 other downstream 621400 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 1915069 20995341 ~ 21013100 (-)
G102566 NA other downstream 1961259 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2511595 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 2947910 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 654899 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 712638 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 796824 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1544256 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1687470 24623516 ~ 24711368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013165 NA non-coding NC_007129.7 CM002902.2 2935623 ~ 2941879 (-)
grasscarp (Ctenopharyngodon idella) G371555 NA non-coding CI01000169 null 473647 ~ 473907 (-)
rainbow trout (Oncorhynchus mykiss) G1929863 NA non-coding NC_048588.1 CM023242.2 40020748 ~ 40025121 (+)
mexican tetra (Astyanax mexicanus) G139074 NA unknown NC_035912.1 CM008315.1 5276106 ~ 5276468 (-)
mexican tetra (Astyanax mexicanus) G308187 NA non-coding NW_019172850.1 APWO02000117.1 792844 ~ 923218 (+)