G103576


Basic Information

Item Value
gene id G103576
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23219022 ~ 23259188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122573
AGAAAGAAATGTCTTGACCTGTTCTCTGATACTTCCACTGCAGCAACAGTCCAATGTTATAACACCATCTTTTTCAAGCAGTgtctttcaaataaaataaaacaaaaggcaTTTAAAAATAGAATGACGAGTATTTGGATGCCGTTTTTTGCAGAAAGCGAAAACTGTTGAAAGGAAACTgggaaagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
ko00330 Arginine and proline metabolism
ko00380 Tryptophan metabolism
ko00982 Drug metabolism - cytochrome P450

RNA

RNA id representative length rna type GC content exon number start site end site
TU122573 True 225 lncRNA 0.29 2 23219022 23259188

Neighbor

gene id symbol gene type direction distance location
LOC113526825 LOC108263933 coding downstream 56713 23158732 ~ 23162309 (-)
LOC113526884 NA coding downstream 65373 23150108 ~ 23153649 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 877581 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1554695 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1584465 21623853 ~ 21634557 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 38167 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 74989 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 196505 23455693 ~ 23504297 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding upstream 254205 23513393 ~ 23535680 (-)
dcun1d5 dcun1d5,LOC107712802 coding upstream 288204 23547392 ~ 23557534 (-)
G103436 NA non-coding downstream 282976 22928169 ~ 22936046 (-)
G103410 NA non-coding downstream 335869 22865924 ~ 22883153 (-)
G103235 NA non-coding downstream 882319 22335946 ~ 22336703 (-)
G103161 NA non-coding downstream 990306 22228385 ~ 22228716 (-)
G103159 NA non-coding downstream 991159 22227628 ~ 22227863 (-)
G103600 NA non-coding upstream 3619 23262807 ~ 23263083 (-)
G103702 rps3,LOC107600794 non-coding upstream 10956 23270144 ~ 23275282 (-)
G103719 NA non-coding upstream 62475 23321663 ~ 23323412 (-)
G103727 NA non-coding upstream 70488 23329676 ~ 23330101 (-)
G103817 NA non-coding upstream 252969 23512157 ~ 23513328 (-)
si LOC108264758,LOC108431149 other downstream 912253 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2205922 20995341 ~ 21013100 (-)
G102566 NA other downstream 2252112 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2802448 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3238763 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 331757 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 389496 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 473682 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1221114 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1364328 24623516 ~ 24711368 (-)

Expression


Co-expression Network