G104750


Basic Information

Item Value
gene id G104750
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25243472 ~ 25245244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123932
GTTTGGGTGGAACTTTTTTCCACAATGTTAAGAACAATCAGTATTTATAAAGTATTATAAAGCAAGGATATCTTCATAAACTGTAAACAACCATGAATATAGGCaagaaaagaacaacaaaaagaatACGGGTGAGAACAAGGGTacaagggatttttttttctttttgcattgaAAGAATAGTAATTAATTGTTTTCAGTTTAACTAAAGCTGTACTTAAAAGAAACAATATATTAATTGTGTGGTTATCtgcaaaaaaggaaaacagcaaaaaaagacaaaaaacaccacatcatcatcaaaacagagaagagtgcttacacactgtacacacagcaGTCTTGCAAACATGTTGACATGGTCATTTCTGGGGAAGAACATCCTCTGATATCCCTTGCTGTAATTTAGACAGCACTGTTTAACTAGTCAAATTATTATAAAGTACAAAACTGTAATATGTGTGGGAATTTTAAAGGATGTCATTCTTATTtgaaaataacaatatattacAAGATGTTAATGACAGTAATCTATAGTACTCTAGCCTAATGGATGAAAATAAGCACAAATGCAAACATCATAGCCCATAAAATCTGCATTAAcagattttatacattttctgtattatactatattatacatTATCCCTATCTATATTATACATTATctatttctgtagtaacaagcAATTGACAGGTACTTGTAAAGTGGATGCTTaacataatctaaaactaatgaTAAAGAATCAAACAGaatgctgttatttaataagaaaaaaagtataattgttgatatggtgatgttttctgtaagtagatgtttatttaacctttatggaaggagtcgctagtgtcagcactttgtcatGGTCACtaagttttctgccacgggAAAGTGTTCAGGGAAGCAGACTTTGtaatttctgttttctctgtaacacaacAAGCTTATTAGCTTTAAAAGAGTTAAtaaaaagagacgctggtgagagaatgaccaTGTTTATATTTAGCTGCTTTAACaggagtgataacaggaactatcttgctataactataaactgataagtGGTGTCATCCTTTAATTagtaatcattaaaaaatgtaatcatcggtaaattgctgtggtataagaggaataaaacacttcgggacatgctgttatgggaaaaggctgcatcacaccacttcatcactgattattttctgtaacagtacactgtcgtgttttattccttagaaCTGTATGCAAAGTATATGCATTTGTGAGTTCAGTggaaacttttttaaatcatattttaatatgcACATTAAGTATGGTATTAATCAAAAGCCAACTATCCAGAGAAAAGTGTACAAACAGCAACAATACGCATGcattaatacataaatactgGCTGtacttaattaatattaaaacagtACAGTTGTGGTCTCTCACCAGCTGCATTTGTTATTTCATCCCTTAGTTAAATGTGCATGCTGATATTTTTCATACAAATATATAGTTGCTACATTGGTACTACTGTACAGGTTGTTAAAGCATGCGCATTGTGCCAAGGTAAGATTTCCTAAAGTCTAATGGTGATGACAAGatgacacatttttacacaatgtGCGCTACTCTCACACTCAACATCATTTCCCCAACATAACCTAAAATGTTCAAGGAAGATATTCCTATTATATAATCAGGTAGTATCTACTACATTTCCCCAGTATTCCACCCCTGAATAATCCCAAATATATAGGAAACATCAGGACcacattact
>TU123936
ttttattccttagaaCTGTATGCAAAGTATATGCATTTGTGAGTTCAGTggaaacttttttaaatcatattttaatatgcACATTAAGTATGGTATTAATCAAAAGCCAACTATCCAGAGAAAAGTGTACAAACAGCAACAATACGCATGcattaatacataaatactgGCTGtacttaattaatattaaaacagtACAGTTGTGGTCTCTCACCAGCTGCATTTGTTATTTCATCCCTTAGTTAAATGTGCATGCTGATATTTTTCATACAAATATATAGTTGCTACATTGGTACTACTGTACAGGTTGTTAAAGCATGCGCATTGTGCCAAGGTAAGATTTCCTAAAGTCTAATGGTGATGACAAGatgacacatttttacacaatgtGCGCTACTCTCACACTCAACATCATTTCCCCAACATAACCTAAAATGTTCAAGGAAGATATTCCTATTATATAATCAGGTAGTATCTACTACATTTCCCCAGTATTCCACCCCTGAATAATCCCAAATATATAGGAAACATCAGGACcacattact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123932 True 1773 lncRNA 0.32 1 25243472 25245244
TU123936 False 546 lncRNA 0.34 1 25243472 25244017

Neighbor

gene id symbol gene type direction distance location
rasgrp4 LOC108264291,LOC108428524 coding downstream 61365 25155182 ~ 25182107 (-)
ppp1r13l ppp1r13l coding downstream 108216 25106429 ~ 25135256 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding downstream 208590 25024817 ~ 25034882 (-)
siae siae coding downstream 466690 24767575 ~ 24776782 (-)
znf296 LOC108264426 coding downstream 492875 24739091 ~ 24750597 (-)
LOC117597607 NA coding upstream 50214 25295458 ~ 25301413 (-)
LOC113526534 NA coding upstream 59492 25304736 ~ 25319693 (-)
LOC113526369 LOC108264860 coding upstream 98981 25344225 ~ 25346964 (-)
LOC113526366 LOC108264060,LOC108430275 coding upstream 594226 25839470 ~ 25870271 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding upstream 645055 25890299 ~ 25905340 (-)
G104747 NA non-coding downstream 1702 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 28682 25192057 ~ 25214790 (-)
G104694 hnrnpul1 non-coding downstream 92316 25113977 ~ 25151156 (-)
G104320 NA non-coding downstream 709053 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 778894 24414900 ~ 24464578 (-)
G105092 NA non-coding upstream 588035 25833279 ~ 25836038 (-)
G105219 NA non-coding upstream 842236 26087480 ~ 26087695 (-)
G105379 NA non-coding upstream 1074788 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 1498459 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 1500875 26746119 ~ 26746339 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 163960 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 479311 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 532104 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 581494 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 668797 24480302 ~ 24574675 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 140081 25385325 ~ 25548928 (-)
G105376 NA other upstream 994086 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1323841 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1899644 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 4375555 29620799 ~ 29714001 (-)

Expression


Co-expression Network