G105092


Basic Information

Item Value
gene id G105092
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25833279 ~ 25836038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124309
TCgcttgttgttgctgctgcctTTTTTCTGCAGAAGCAGAAGCTAAATCAGTGTCTCTGTGGCACCACTAGGTGGCAGTAGAGGATCATACTCACCATACTTTGTGGGAAAGATGTCTTCATCAGTGACGAGCTTCTGGACTGAACTCATGACAAAGTCTACGTACTGTGGCGCCGTGCATTTTGTCTTCTTCCCTCTCTCATCTTGCCAGCAGTACGtcctgagagagaaagaaagagagacctGATATCTCGGGACACATGATTTTCCTAAAATTTCCATTATCAGAATAACCCTACAGCAAAGACACTGCAAATCATCTCGTATTACAGGAAAACATGATCCAACAAGCTCATAATCCGACATGCTGGTGGATCATTAACTAAACCGTCTAGCTGACCATCTGTATATGGGGCTGAACGTGTGTTTGATCAGCCTCCGCTTTTCTTCTTTCAGTTTATCTCCTGGCAGGTGACCCACTTACAGTGCAAGAGCAGCTGCAGGGTTTTTGGGCGTCACCTTCATAAACAAAAGGGCTTCTGTGTGCACATCCTGACTGAGGACGAGAAATGGGTTTTGACCAAATTAGCACTTGTGTGTATTTCCAgcctttttaataaattacctTTAACCTGGGCTGCGGATATGTTAAGGTGTAAGTGTGGCAGGCTGGGAAAACCCTTCTCCCTTTTATAGTTCTGAGAATTACAGGGTTTTCCGTGAACTGAAATACGTTTCTCTGAACTGAAATACATTCTAAgcacaaaatttcaaaaatgtctttttattaggtcatttaaacattttgaaacGTTGTCcactgtcatctgtacagaCTCTGTAAGCGCTcttctgttttgatgatgatAGTTTTCCCTTAAAAGGACACATTTTTCTACTATCATCAATATCAAATTaacaaatgggaaaaaaacaaacaaacaaaactgttaGCTCAGTTTCAGTGTTTAGCATTCAGCAAAGAGATTCCCAAAACCCGGCCATGAATTTACGTTTCTAtggttttatatatgttttttgaGTAATAAGAGCTGTTAAAAGGTCAGATTTTACCCATCTACACTCCTGGATATCAGTTATGTGTGTCCTTGGTGCTCGGGGCACTTTAATCTCCCCGTATCATCTTTAATCAGCAAGGCTAAAACACAACACTTCACACTCTGCTTCCCAGAGGTGAAGCCCACTGATAGGGCAAAGGGTGACCTCACGTCCAAGGTCATGACTTTGAGCAGTCACCCGTCACAGAGCGAGTGTTGAGTTGCCAGAGTGGCTGCAGGATCAATAAGTTGAAGTGAAGTGAGAGTGAATAATGTAGGAGAGAGTGTTCTTACGTGTTGCAGGCCGACATGACGGGACACGTATCTCCTGTGCAGAACTCGGACACAGTGCTGTACTGCAGGTTGATCAGATTGAAGAACGTTGTGGCTGTGGAgcagaaaaggaggaaaattgttttgtattttaaagttgtgtgtaaatgttacaaaattttTGTTATGCTGACTGTCTTCGTACTTGtgcgtatgttgataaatgccaatcacctATAAATCACCACGCGCATTCACAGAACAGCTGAATCATGCtcatcatttaattttaatataatgcaAAGCATATTGTAATCACAGTGTGGCACGATACAGTGTAACAGCGATATTGTGCAGGCTCACATTTACAACCTTAATGCATAGCTGGAAAAATATCTACAGTGTCGCACACTTAGACTTTAATATATATCTGCCTCAGGTTCTAACGACATTCAgagtaaatgtttaaagaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124309 True 1807 lncRNA 0.41 2 25833279 25836038

Neighbor

gene id symbol gene type direction distance location
LOC113526369 LOC108264860 coding downstream 486315 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 513586 25304736 ~ 25319693 (-)
LOC117597607 NA coding downstream 531866 25295458 ~ 25301413 (-)
rasgrp4 LOC108264291,LOC108428524 coding downstream 651172 25155182 ~ 25182107 (-)
ppp1r13l ppp1r13l coding downstream 698023 25106429 ~ 25135256 (-)
LOC113526366 LOC108264060,LOC108430275 coding upstream 3432 25839470 ~ 25870271 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding upstream 54261 25890299 ~ 25905340 (-)
cd276 cd276 coding upstream 358012 26194050 ~ 26292607 (-)
zgc:158464 LOC108264397 coding upstream 488343 26324381 ~ 26464945 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 679483 26515521 ~ 26532135 (-)
G104750 NA non-coding downstream 588035 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 591509 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 618489 25192057 ~ 25214790 (-)
G104694 hnrnpul1 non-coding downstream 682123 25113977 ~ 25151156 (-)
G104320 NA non-coding downstream 1298860 24533737 ~ 24534419 (-)
G105219 NA non-coding upstream 251442 26087480 ~ 26087695 (-)
G105379 NA non-coding upstream 483994 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 907665 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 910081 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 951902 26787940 ~ 26788856 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 284351 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 753767 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1069118 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1121911 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 1171301 24631639 ~ 24661978 (-)
G105376 NA other upstream 403292 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 733047 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1308850 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3784761 29620799 ~ 29714001 (-)
G107525 NA other upstream 4507493 30343531 ~ 30344876 (-)

Expression


Co-expression Network