G105219


Basic Information

Item Value
gene id G105219
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26087480 ~ 26087695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124447
GTTTTGAAATCCATTCTcagtatatttttttcacttccaGTTTGAGCGAAGTTAAAATTTATTCAAGTTACCGTAGCCTACACTTTACTGTGTAGTTTTCTGCTGCTGATTAAGGCCATGGATGATGTAAAAGGAGGGTTGCATTTTGAAATTATGTCTCTTTTTGCCcaagatcatattttttttattccacaaAAGAACAAGCATAAAAAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124447 True 216 lncRNA 0.33 1 26087480 26087695

Neighbor

gene id symbol gene type direction distance location
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 182140 25890299 ~ 25905340 (-)
LOC113526366 LOC108264060,LOC108430275 coding downstream 217209 25839470 ~ 25870271 (-)
LOC113526369 LOC108264860 coding downstream 740516 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 767787 25304736 ~ 25319693 (-)
LOC117597607 NA coding downstream 786067 25295458 ~ 25301413 (-)
cd276 cd276 coding upstream 106355 26194050 ~ 26292607 (-)
zgc:158464 LOC108264397 coding upstream 236686 26324381 ~ 26464945 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 427826 26515521 ~ 26532135 (-)
rec114 rec114 coding upstream 579572 26667267 ~ 26691735 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 739329 26827024 ~ 26847963 (-)
G105092 NA non-coding downstream 251442 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 842236 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 845710 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 872690 25192057 ~ 25214790 (-)
G104694 hnrnpul1 non-coding downstream 936324 25113977 ~ 25151156 (-)
G105379 NA non-coding upstream 232337 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 656008 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 658424 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 700245 26787940 ~ 26788856 (-)
G105639 NA non-coding upstream 731771 26819466 ~ 26819717 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 538552 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1007968 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1323319 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1376112 24623516 ~ 24711368 (-)
G105376 NA other upstream 151635 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 481390 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1057193 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3533104 29620799 ~ 29714001 (-)
G107525 NA other upstream 4255836 30343531 ~ 30344876 (-)

Expression


Co-expression Network