G105376


Basic Information

Item Value
gene id G105376
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26239330 ~ 26241005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124615
CCTGAGACCCAACAATTCATTTTTGTCCTCCGTGGGGGACAGGAGTCTGATACCTCTAAGTCAAGCACAATTAATGCAATCTTTTTGGGTCCTACTGTGCTGTCAAGAGGACATCCTGGGCTTTCTAGTGATGCCACAGTTGTGGGGGTGTGGCTAACAGAGCACACAGACTTTCTTTTCAAAATGGCAGCCATTGCAGCTTCCACATTTTATGGCACCAAGGGAGTTTCAACCCTGTTGTGGAGGAGAACACTGTGCAAGACAATGCTGGCCACAACCACCAAGACTGGAGGCCCTCTGATTACTTCAAACAGTACATAGATAACCAGGTTTTTGAGaaaatgtcagaacacacaaaccAGCGGGAGGTGCTCATCTCTGGAGGCAGCCTTAAAACCACTCCAGAGGAGCTGAAAACCTTCTTTGGCATATCTATGTACATGGCATGCCTCGGATACCCTAGGATCCGGATGTACTGGGCAGCGAAGACGAGGGTCCCAGTCATAGCCAATTCAATGAGTCGAGACAGATTCTTCAAGATTAGGCAGTCCATCAAACTCACAAATGATCTTGATGTCTCtgcagaggagaaaaagaatgatCCCCTCTGGAAGGTAAGACCTCTCTTAAACAGAGTGCAACAAGGCTGCCTCAATCTGCCAAGACCAGGGAAGGCCTGTGTAGATGAGCAGATGATACCCTTCACAGGTCGGTGTCCTGTACGGCAGTTTGTGCCAGGGAAACCAAATCCCACAGGACTGAAAGCATTTGTGCTTGCCAGTCCCAATGGTCTGGTGCTGGATTTTGAAGTTTACAAGGGCCGGAATACGTTCACTGACCAGCAGCTGGGAATCGGAGGGAATGCAGTCGCTCGGATGGCACAGTCTCTTCCAAGAGGAACACACCTGTACTTTGACAGATATTTCACTTCTATCAAAGTACTGGATATGTTGAAAGCAAATGGTCTCCTGGGAACAGGGACCATTATGAAAAATAGAATCCCTGCACTGTGCAAGTCAAAGATGTCAGATGACaccaaactaaaaaaac

Function

NR:

description
PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3

GO:

id name namespace
GO:0098827 endoplasmic reticulum subcompartment cellular_component
GO:0005787 signal peptidase complex cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124615 True 1050 TUCP 0.48 2 26239330 26241005

Neighbor

gene id symbol gene type direction distance location
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 333990 25890299 ~ 25905340 (-)
LOC113526366 LOC108264060,LOC108430275 coding downstream 369059 25839470 ~ 25870271 (-)
LOC113526369 LOC108264860 coding downstream 892366 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 919637 25304736 ~ 25319693 (-)
LOC117597607 NA coding downstream 937917 25295458 ~ 25301413 (-)
zgc:158464 LOC108264397 coding upstream 83376 26324381 ~ 26464945 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 274516 26515521 ~ 26532135 (-)
rec114 rec114 coding upstream 426262 26667267 ~ 26691735 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 586019 26827024 ~ 26847963 (-)
LOC113526953 NA coding upstream 891124 27132129 ~ 27138338 (-)
G105219 NA non-coding downstream 151635 26087480 ~ 26087695 (-)
G105092 NA non-coding downstream 403292 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 994086 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 997560 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 1024540 25192057 ~ 25214790 (-)
G105379 NA non-coding upstream 79027 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 502698 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 505114 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 546935 26787940 ~ 26788856 (-)
G105639 NA non-coding upstream 578461 26819466 ~ 26819717 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 690402 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1159818 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1475169 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1527962 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 1577352 24631639 ~ 24661978 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 328080 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 903883 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3379794 29620799 ~ 29714001 (-)
G107525 NA other upstream 4102526 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 4487039 30728044 ~ 30732059 (-)

Expression


Co-expression Network