G105379


Basic Information

Item Value
gene id G105379
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26320032 ~ 26320770 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124618
acagTAGAAGGGAAAACCTTAATGGAACTgatccaaaaatctgaaaaatcgaacgactgacttggccaaaagtgtcatttttcacctgtagtgtcttgccttattTTGAGGATGTACAACGTTTGTATCCAAGTGGCCTATGTCGTAGTCGGGTTCCGAATGTATACTAACAGGAggttatttttacataaagtctaatctgttttaaaaaaataaaataaaaaacagagtgTATGACCGGCATGTTCAGGTATCAGATGACACACAggattgtaaaataattatcaGATGCTGGCAGATgggagacaggaaaaaaaaaggtttgttgtGTGATGGCAGGTCTGAGGATGAATAGCAGGAAGACAGGATAATGGgggatggaggaggagaggatgATAAAGCCCTACTCTTCATTCTGCTTCGTTGTGTCTGTTAGAGCATCTCACTTTGTGTAGACAAGTGTTTTCTagtaagctgtgtgtgtgtgtagttgtgtgcgTGATGCTGACGCTTCCCTCAGCTCTATTCAGATGGATGCGCTATTCGCccatgtgtgttgtgtgtgtgtgtgtgtgcgcgcatgtgcgtgtgtgtgtcctcaaCCATACACTGTCGCCTCACCGGAATCTAATATTTGTGTGTAAGTTAGTTTCCTCCTGTGTATGCACTAATAGAACATATCTGTACACTTTCATGGCCAAATGTATATACTGAATGTAATAAACGGGGATGTGGAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124618 True 739 lncRNA 0.42 1 26320032 26320770

Neighbor

gene id symbol gene type direction distance location
cd276 cd276 coding downstream 27425 26194050 ~ 26292607 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 414692 25890299 ~ 25905340 (-)
LOC113526366 LOC108264060,LOC108430275 coding downstream 449761 25839470 ~ 25870271 (-)
LOC113526369 LOC108264860 coding downstream 973068 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 1000339 25304736 ~ 25319693 (-)
zgc:158464 LOC108264397 coding upstream 3611 26324381 ~ 26464945 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 194751 26515521 ~ 26532135 (-)
rec114 rec114 coding upstream 346497 26667267 ~ 26691735 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 506254 26827024 ~ 26847963 (-)
LOC113526953 NA coding upstream 811359 27132129 ~ 27138338 (-)
G105219 NA non-coding downstream 232337 26087480 ~ 26087695 (-)
G105092 NA non-coding downstream 483994 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 1074788 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 1078262 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 1105242 25192057 ~ 25214790 (-)
G105608 NA non-coding upstream 422933 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 425349 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 467170 26787940 ~ 26788856 (-)
G105639 NA non-coding upstream 498696 26819466 ~ 26819717 (-)
G105666 NA non-coding upstream 554825 26875595 ~ 26875834 (-)
G105376 NA other downstream 79027 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 771104 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1240520 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1555871 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1608664 24623516 ~ 24711368 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 248315 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 824118 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3300029 29620799 ~ 29714001 (-)
G107525 NA other upstream 4022761 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 4407274 30728044 ~ 30732059 (-)

Expression


Co-expression Network