G105608


Basic Information

Item Value
gene id G105608
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26743703 ~ 26743960 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124869
aaaaaattgattgagATTAAGGAACTGTCTGAAAATACTCACCACCATCTTGTTTTTGGCGACCCAACAGTCTGGAGGGAAGTCCTGCAGCATGGGTACGAGGAACTGCAGGCAGCCATCCCAGTGGCACAGCAGGAGCATCATGCCAATCAGATTCACGATACGCACCATCGCACTGGCCAGGTCATAGGTCATATGGAATATCTGGGAAACAAATTTGATTCATTACTACAGTCATGACAATTCGGTCATCAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124869 True 258 lncRNA 0.46 1 26743703 26743960

Neighbor

gene id symbol gene type direction distance location
rec114 rec114 coding downstream 51968 26667267 ~ 26691735 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 211568 26515521 ~ 26532135 (-)
zgc:158464 LOC108264397 coding downstream 278758 26324381 ~ 26464945 (-)
cd276 cd276 coding downstream 451096 26194050 ~ 26292607 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 838363 25890299 ~ 25905340 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 83064 26827024 ~ 26847963 (-)
LOC113526953 NA coding upstream 388169 27132129 ~ 27138338 (-)
LOC117597534 NA coding upstream 394287 27138247 ~ 27143595 (-)
LOC113526685 LOC108264058,LOC108263899 coding upstream 431307 27175267 ~ 27186037 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 449959 27193919 ~ 27202055 (-)
G105379 NA non-coding downstream 422933 26320032 ~ 26320770 (-)
G105219 NA non-coding downstream 656008 26087480 ~ 26087695 (-)
G105092 NA non-coding downstream 907665 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 1498459 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 1501933 25239110 ~ 25241770 (-)
G105611 NA non-coding upstream 2159 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 43980 26787940 ~ 26788856 (-)
G105639 NA non-coding upstream 75506 26819466 ~ 26819717 (-)
G105666 NA non-coding upstream 131635 26875595 ~ 26875834 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding upstream 361408 27105368 ~ 27107571 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 135364 26569085 ~ 26608339 (-)
G105376 NA other downstream 502698 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1194775 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1664191 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1979542 24751653 ~ 24764161 (-)
si:dkey-151j17.4 NA other upstream 400928 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 2876839 29620799 ~ 29714001 (-)
G107525 NA other upstream 3599571 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3984084 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 4041633 30785593 ~ 30849697 (-)

Expression


Co-expression Network