G105639


Basic Information

Item Value
gene id G105639
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26819466 ~ 26819717 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124902
cccatccaagtgcacatacacagtagtgaacacacacccagagcagtgggcctttttttgctgcggcacccggggagcagttgggggttcggtgccttgctcaagggtctcacctcagtcgtggtattgagggtggaggagagcgctggtcattcactcccccgacctacaatccctgccagacccgagactcgaacccacaaccttcaggttcaccttcgggttgcaaggcagactctctatccattaggc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591947

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124902 True 252 lncRNA 0.58 1 26819466 26819717

Neighbor

gene id symbol gene type direction distance location
rec114 rec114 coding downstream 127731 26667267 ~ 26691735 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 287331 26515521 ~ 26532135 (-)
zgc:158464 LOC108264397 coding downstream 354521 26324381 ~ 26464945 (-)
cd276 cd276 coding downstream 526859 26194050 ~ 26292607 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 914126 25890299 ~ 25905340 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 7307 26827024 ~ 26847963 (-)
LOC113526953 NA coding upstream 312412 27132129 ~ 27138338 (-)
LOC117597534 NA coding upstream 318530 27138247 ~ 27143595 (-)
LOC113526685 LOC108264058,LOC108263899 coding upstream 355550 27175267 ~ 27186037 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 374202 27193919 ~ 27202055 (-)
G105634 LOC108263998 non-coding downstream 30610 26787940 ~ 26788856 (-)
G105611 NA non-coding downstream 73127 26746119 ~ 26746339 (-)
G105608 NA non-coding downstream 75506 26743703 ~ 26743960 (-)
G105379 NA non-coding downstream 498696 26320032 ~ 26320770 (-)
G105219 NA non-coding downstream 731771 26087480 ~ 26087695 (-)
G105666 NA non-coding upstream 55878 26875595 ~ 26875834 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding upstream 285651 27105368 ~ 27107571 (-)
G105842 NA non-coding upstream 303560 27123277 ~ 27129172 (-)
LOC117597606 LOC108264746 non-coding upstream 323990 27143707 ~ 27144874 (-)
LOC113526487 LOC108264058 non-coding upstream 368625 27188342 ~ 27188792 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 211127 26569085 ~ 26608339 (-)
G105376 NA other downstream 578461 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1270538 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1739954 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 2055305 24751653 ~ 24764161 (-)
si:dkey-151j17.4 NA other upstream 325171 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 2801082 29620799 ~ 29714001 (-)
G107525 NA other upstream 3523814 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3908327 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3965876 30785593 ~ 30849697 (-)

Expression


Co-expression Network