si:dkey-151j17.4


Basic Information

Item Value
gene id si:dkey-151j17.4
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27144888 ~ 27160099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125182
ATCCCATCTGAGGTTTCAAATCCAGACATCCAGCCTACCATTCCCTATGTCAGACCAATAGCTGGAGGTATAAGACCAGGAATGCGACTGCATGTTGAAGGGGCTGTTCCTCCTAATGCTAAACAGtttcaaataaatttcaaaacagGAGCAAAAGATTCTGATGATGTCGCTTTTCATTTCAACCCCCGGATCGGTCAGTACGTATACATGAACATCTTCAGAAATGGGAAATGGCAGAAGGAGGAATTGGGTCCTCATGAGCCCTTTGTGAAAGGCGCAGCCTTTAAATTACTGTTTCTCATCAATAAGGATTTCTATGAGGTCCATGTGAATGGAGTGCGTCTCTACACCTTCAATCACCGCATTCCTTTAGAGAGCGTTACTACACTTGCAATAATAGGAGATGTTTCAATACACTGGATGGGTTTTGAAGATTGGAGCCAAACATTCACCAGCACCTTCATCATCCCATCTGAGGTTTCAAATCCAGACATCCAGCCTACCATTCCCTATGTCAGACCAATAGCTGGAGGTATAAGACCAGGAATGCGACTGCATGTTGAAGGGGCTGTTCCTCCTAATGCTAAACAGtttcaaataaatttcaaaacagGACCAAAAGATTCTGATGATGTCGCTTTTCATTTCAACCCCCGGATCGGTCAGTACGTATACATGAACATCTTCAGAAATGGGAAATGGCAGAAGGAGGAATTGGGTCCTCATGAGCCCTTTGTGAAAGGCGCAGCCTTTAAATTACTGTTTCTCATCAATAAGGATTTCTATGAGGT
>XM_034304983.1
ATGAACATCTTCAGAAATGGGAAATGGCAGAAGGAGGAATTGGGTCCTCATGAGCCCTTTGTGAAAGGAGCAGCCTTTAAATTACtgtttctcatcaacaaggatTTCTATGAGGTCCATGTGAATGGAGTGCGTCTCTACACCTTCAATCACCGCATTCCTTTAGAGAGCGTTACTACACTTGCAATAATAGGAGATGTTTCAATACACTGGTTGGGTTTTGAAGATTGGAGCCAAACATTCACCAGCACCTTCATCATCCCATCTGAGGTTTCAAATCCAGACATCCAGCCTACCATTCCCTATGTCAGACCAATAGCTGGAGGTATAAGACCAGGAATGCGACTGCATGTTGAAGGGGCTGTTCCTCCTAATGCTAAACAGtttcaaataaatttcaaaacagGAGCAAAAGATTCTGATGATGTCGCTTTTCATTTCAACCCCCGGATCGGTCAGTACGTATACATGAACATCTTCAGAAATGGGAAATGGCAGAAGGAGGAATTGGGTCCTCATGAGCCCTTTGTGAAAGGCGCAGCCTTTAAATTACTGTTTCTCATCAATAAGGATTTCTATGAGGTCCATGTGAATGGAGTGCGTCTCTACACCTTCAATCACCGCATTCCTTTAGAGAGCGTTACTACACTTGCAATAACAGGAGATGTTTCAATACACTGGATGGGTTTTGAAGATTGGAGCCAAACATTCATCAGCACCTTTACCATCCCATCTGAGGTTTCAAATCCAGACATCCAGCCTACCATTCCCTATGTCAGACCAATAGCTGGAGGTATAAGACCAGGAATGCGACTGCATGTTGAAGGGGCTGTTCCTCCTAATGCTAAACAGtttcaaataaatttcaaaacagGAGCAAAAGATTCTGATGATGTCGCTTTTCATTTCAACCCCCGGATCGGTCAGTACGTATACATGAACATCTTCAGAAATGGGAAATGGCAGAAGGAGGAATTGGGTCCTCATGAGCCCTTTGTGAAAGGCGCAGCCTTTAAATTACTGTTTCTCATCAATAAGGATTTCTATGAGGTCCATGTGAATGGAGTGCGTCTCTACACCTTCAATCACCGCATTCCTTTAGAGAGCGTTACTACACTTGCAATAACAGGAGATGTTTCAATACACTGGATGGGTTTTGAAGATTGGAGCCAAACATTCACCAGCACCTTCATCATCCCATCTGAGGTTTCAAATCCAGACATCCAGCCTACCATTCCCTATGTCAGACCAATAGCTGGAGGTATAAGACCAGGAATGCGACTGCATGTTGAAGGGGCTGTTCCTCCTAATGCTAAACAGtttcaaataaatttcaaaacagGGGTAAAAGATTCTGATGATGTCGCTTTTCATTTCAACCCCGGATCGGTCGAATGCGTATACATGAACATCTTCAGAAATGGGAAATGGCAGAAGGAGGAATTGGGTCCTCATGAGCCCTTTGTGAAAGGCGCAGCCTTTAAATTACTGTTTCTCATCAATAAGGATTTCTATGAGGTCCATGTGAATGGAGTGCGTCTCTACACCTTCAATCACCGCATTCCTTTAGAGAGCGTTACTACACTTGCAATAATAGGAGATGTTTCAATACACTGGATGGGTTTTGAAAAAAGGAAAGTTCCTACTTTGTTCAAAGAGAGCAAAGTTATACTGATGGGAAGCGGAAGCTGGACATTCATCCCATTAGAGATTTCTTACCTGATCAGCAACCCAGCACTGCCATATGTGGGTGAAATCCCAGGAGGGATAAAACAAGATGTAGCTGTAGTTTTCCAAGGAACTGTTCCTGCAGATGCAAAAAGCTTTGGAATAAATTTCAAAACGGGGCCCTCTGATGGTGAAGACATCGCTTTTCACTACAGCCCTCGCTTTGGTGATCATACCACCCTGAACAGCTTCAGAAACGGAAGCTGGGAGAAGCAGGAAACTGCACCTGATAAACCCTTCACCAGGGGAGGAGCCTTCATAATTCTTGTAGTCATCAACTCTGAGGGCTATGAGGTCTATGTGAACGGTTTAAGACATTGCACATTCAAGCACCGCATTCCTCTAGAGAAAGTGTCTGCAGTTAATGTTTGGGGAAATGTTTCCCTCCTCGTCTGTGGCTTTATTGAAAGCTGGAGCACTACTTCATCCTTTAGAGAGCTAAAGAAAATCACAAGCACACAGAGCGCCACCTCGAGTTTGACGTCCTTGCCTTTAGAGATTTCACATCCTGTCACTAACCCTGCACTTCCCTATGTGGGTAAAATCCCAGGAGGGTTAAAACAAGACACAGCTATATTCTTACAAGGGACTGTTCTTGCAGATGCAAAGAGgtTTGCAATAAATTTCAAAACGGGGCCCTCTGATGGCGATGACATCGCTTTTCACTACAACCCCCGCATTGGTGATCGTACCGTCCTGAACAGCTTCAGAAATGGAAGCTGGGAGACGCAGGAAACTGCACCTGATAAACCCTTCACCAGGGGAGAAGCCTTCCAAATCTTCATTGCTGTCAAATCACATGgctatgagGTCTACGTGAATGGTTTAAAGCACTGCACGTTCAAGCACCGAATTCCTCTAGACAAAGTTTCAGCACTTAGTTTTGATGGAGATGTTTCTCTCCTCATATCTGGTTTTATTCATAAATGGACGTGTCCTTCTTTGTTCATCAAAGAGAAGAAATCTTTACTGATGGGAAGTGGAACCTCAAGATTTATCCCATTGGAGATCTGTAATCCAATCAGCAGCCCAGCACTGCCATATGTGGGTGAAATCCCAGGAGGGATAAAACAAGATATAGCTGTAGTTTTCCAAGGAACTGGAGGAGCCTTCATAATTCTTGTAGTCATCAACTCTGAGGGCTATGAGGTCTATGTGAACGGTTTAAGACATTGCACATTCAAGCACCGCATTCCTCTAGAGAAAGTGTCTGCAGTTAATGTTTGGGGAAATGTTTCCCTCCTCGTCTGTGGCTTTATTGAAAGCTGGAGCACTACTTCATCCTTTAGAGAGCTAAAGAAAATCACAAGCACACAGAGCGCCACCTCGAGTTTGACGTCCTTGCCTTTAGAGATTTCACATCCTGTCACTAACCCTGCACTTCCCTATGTGGGTAAAATCCCAGGAGGGTTAAAACAAGACACAGCTATATTCTTACAAGGGACTGTTCTTGCAGATGCAAAGAGGTTTGCAATAAATTTCAAAACGGGGCCCTCTGATGGCGATGACATCGCTTTTCACTACAACCCCCGCATTGGTGATCGTACCGTCCTGAACAGCTTCAGAAATGGAAGCTGGGAGACGCAGGAAACTGCACCTGATAAACCCTTCACCAGGGGAGAAGCCTTCCAAATCTTCATTGCTGTCAAATCACATGgctatgagGTCTACGTGAATGGTTTAAAGCACTGCACGTTCAAGCACCGAATTCCTCTAGACAAAGTTTCAGCACTTACTTTTGATGGCGATGTTTCTCTCCTCATATCTGGTTTTATTCATAAATGGACGTGTCCTTCTTTGTTCATCAAAGAGAAGAAATCTTTACTGATGGGAAGTGGAACCTCAAGATTTATCCCATTGGAGATCTGTAATCCAATCAGCAGCCCAGCACTGCCATATGTGGGTGAAATCCCAGGAGGGATAAAACAAGATATAGCTGTAGTTTTCCAAGGAACTGTTCCTGCAGATGCAAAGAGCtttgaaataaatttcaaaacGGGGCCGTCTGATGGTGAAGACATCGCTTTTCACTACAGCCCTCGCTTTGGTGATCATACCACCCTGAACAGCTTCAGAAACGGAAGCTGGGAGAAGCAGGAAACTGCACCTGATAAACCCTTCACCAGGGGAGGAGCCTTCATAATTCTTGTAGTCATCAACTCTGAGGGCTATGAGGTCTATGTGAACGGTTTAAGACATTGCACATTCAAGCACCGCATTCCTCTAGAGAAAGTGTCTGCAGTTAACGTTTGGGGAAATGTTTCCCTCCTCGTCTGTGGCTTTATTGAAAGCTGGAGCACTACTTCATCCTTTAGAGAGCTAAAGAAAATCACAAGCACACAGAGCGCCACCTCGAGTTTGACGTCCTTGCCTTTAGAGATTTCACATCCTGTCACTAACCCTGCACTTCCCTATGTGGGTAAAATCCCAGGAGGGTTAAAACAAGACACAGCTATATTCTTACAAGGGACTGTTCTTGCAGATGCAAAGAGGTTTGCAATAAATTTCAAAACGGGGCCCTCTGATGGCGATGACATCGCTTTTCACTACAACCCCCGCATTGGTGATCGTACCGTCCTGAACAGCTTCAGAAATGGAAGCTGGGAGACACAGGAAACTGCACCTGATAAACCCTTCACCAGGGGAGAAGTCTTCCAAATCTTCATTGCTGTCAAATCACATGgctatgagGTCTACGTGAATGGTTTAAAGCACTGCACGTTCAAGCACCGAATTCCTCTAGACAAAGTTTCAGCACTTAGTTTTGATGGAGATGTTTCTCTCCTCATATCTGGTTTTATTCATAAATGGACGTGTCCTTCTTTGTTCATCAAAGAGAAGAAATCTTTACTGATGGGAAGTGGAACCTCAAGATTTATCCCATTGGAGATCTGTAATCCAATCAGCAGCCCAGCACTGCCATATGTGGGTGAAATCCCAGGAGGGATAAAACAAGATATAGCTGTAGTTTTCAAAGGAACTGTTCCTGCAGATGCAAAAGCtttgaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125182 False 794 TUCP 0.43 7 27152312 27157140
XM_034304983.1 True 4740 mRNA 0.44 41 27144888 27160099

Neighbor

gene id symbol gene type direction distance location
LOC117597534 NA coding downstream 1293 27138247 ~ 27143595 (-)
LOC113526953 NA coding downstream 6550 27132129 ~ 27138338 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding downstream 296925 26827024 ~ 26847963 (-)
rec114 rec114 coding downstream 453153 26667267 ~ 26691735 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 612753 26515521 ~ 26532135 (-)
LOC113526685 LOC108264058,LOC108263899 coding upstream 15168 27175267 ~ 27186037 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 33820 27193919 ~ 27202055 (-)
LOC113526686 LOC108264731,LOC108432714 coding upstream 43668 27203767 ~ 27297171 (-)
LOC113526860 LOC108443293,LOC108264217 coding upstream 138886 27298985 ~ 27303730 (-)
LOC113526781 LOC108264218 coding upstream 151862 27311961 ~ 27314800 (-)
LOC117597606 LOC108264746 non-coding downstream 14 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 15716 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 37317 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 269054 26875595 ~ 26875834 (-)
G105639 NA non-coding downstream 325171 26819466 ~ 26819717 (-)
LOC113526487 LOC108264058 non-coding upstream 28243 27188342 ~ 27188792 (-)
G106193 NA non-coding upstream 619033 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 701741 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 784717 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 793419 27953518 ~ 27953990 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 536549 26569085 ~ 26608339 (-)
G105376 NA other downstream 903883 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1595960 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2065376 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 2380727 24751653 ~ 24764161 (-)
hipk3b hipk3,LOC108264637 other upstream 2460700 29620799 ~ 29714001 (-)
G107525 NA other upstream 3183432 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3567945 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3625494 30785593 ~ 30849697 (-)
G107803 NA other upstream 3656480 30816579 ~ 30820422 (-)

Expression


Co-expression Network