G106653


Basic Information

Item Value
gene id G106653
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28600119 ~ 28601535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126111
GGTTTAGTGTCAATCCTGGGTTCCAGAAATGTTTTTTGGTTGATGAAAGTGTTCCTGTGGTGAAAATGCACCTAAAGATCCTGGGTGTACATTggaaaaaatattgtttcttCAAGACTGCCATTGTCAAGCCCAAGACCCGGACTAGCCGAGATTGAGTCAAGACCATTTCAAGGCAGTCAAGGACAAGTCAAGATTAAGTCCAAATGAAAGCTAGACTGAGTcgagaatgagacagaaaacCATCAAATTATTTTCAAGGCCAAGCGTTTATTTCAACTAGTTGACTTCATGCGTGCTTTTTGTCAATCATTAGGCTACATTTTCTGGAAGATGTGAAGTTACTActtgtcaaactttgtgtattctaaaagaaaagacaacacaaacattatttttacaatctCTCAGTTGAAACCAAGACCATATTTAATAGGACCAATGCCCAAGACCACCAATAAgttaaagacaagtccaagtcaatacaaAAATGTCTTGAGACAGACTCAAGTCCTACAGCTCTAGCATGATGCAACACACAACAGTAGCATTTACAGTTAATAAATGCAcgggacagtaaatacacaggacagtgcTAATTAGACAGCTCCAGGATTTTACTCATTATTCAGTGAATCTGAGTAAGCGCATGTAGAGAATCCTTCCCAGGTGGACGTTTGAGAAGAATGGTGGCTGCGGTCACTGTTGAGACAGGAagcctctttctgtctctttatctctctgtttctctcgttccctcctcctgtctgtctctctccctctctggaGGATCAGACTAAAAGCGTTTCAGCTCAGTTAATCCTGTTAGCTGAGCTCCCGTGTTCAGACAGGGCGGCTGCAGGCTCTTCTGAGgcctcctttctttttttttcctcctccctcCATCTTTCATAGCTTTGCAAAACACTGACCAGGACCCTCAGCCTCAAAGGCACGACCTGACACGCAGGGGGGCCGAGCGGTTGAAAGAGAGAACACTGAGCTGCTCAGGCATGAGAGAGCCGAACTGAACTAGCCTTCTGGATGGAGCTGGATTTAGCataacagtacacacacacaccatctgtgcatacaaacattcacacaccctCTAAAGCCTTCACATCAGGGGTGAGAGCcactttttttccctgaatCAGCACTGCTCGAGGccttaaaacaaacacattggCTCACGCTGACTCCTGCTAAACCCTGCCCCGAAGCAGGATGTAGTAAACAGTATGTTAGCATGAATGTTTCCAGAATGCCACAGCCACACCAGTTTGGAAGACATACTACTAAGTATGTAGCCAGAGTACTCGTCATGGTGTAATACATTGCACACTGCATGCAATATAGAAGCATTTCAAATCCAAATTAACAGTAGTTTCATTTTTATCCAGTAGGGGACGct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126111 True 1417 lncRNA 0.44 1 28600119 28601535

Neighbor

gene id symbol gene type direction distance location
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding downstream 147804 28448739 ~ 28452315 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding downstream 153181 28423797 ~ 28446938 (-)
irf8 irf8 coding downstream 177134 28415135 ~ 28422985 (-)
foxf1 foxf1 coding downstream 366732 28229438 ~ 28233387 (-)
LOC113526564 dbndd1 coding downstream 394493 28183533 ~ 28205626 (-)
LOC113526572 LOC108264241 coding upstream 168090 28769625 ~ 28774040 (-)
atmin atmin coding upstream 180489 28782024 ~ 28790810 (-)
cenpn cenpn coding upstream 190256 28791791 ~ 28799363 (-)
LOC113526432 cdyl2,LOC106562298 coding upstream 206572 28808107 ~ 28852636 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding upstream 590846 29192381 ~ 29205443 (-)
LOC117597514 NA non-coding downstream 338815 28259697 ~ 28261304 (-)
G106356 NA non-coding downstream 502125 28097773 ~ 28097994 (-)
G106319 NA non-coding downstream 521244 28038090 ~ 28078875 (-)
G106336 NA non-coding downstream 529249 28069599 ~ 28070870 (-)
G106269 NA non-coding downstream 631918 27967982 ~ 27968201 (-)
G106655 NA non-coding upstream 2778 28604313 ~ 28605437 (-)
G106656 NA non-coding upstream 4723 28606258 ~ 28608041 (-)
G106657 NA non-coding upstream 7411 28608946 ~ 28609764 (-)
G106660 NA non-coding upstream 12732 28614267 ~ 28614543 (-)
G106667 NA non-coding upstream 55455 28656990 ~ 28657189 (-)
si:dkey-151j17.4 NA other downstream 1440020 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1991780 26569085 ~ 26608339 (-)
G105376 NA other downstream 2359114 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 3051191 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 3520607 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1019264 29620799 ~ 29714001 (-)
G107525 NA other upstream 1741996 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2126509 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2184058 30785593 ~ 30849697 (-)
G107803 NA other upstream 2215044 30816579 ~ 30820422 (-)

Expression


Co-expression Network