hipk3b (hipk3,LOC108264637)


Basic Information

Item Value
gene id hipk3b
gene name hipk3,LOC108264637
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29620799 ~ 29714001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126679
tttttgtttcATTgctattattgttttgttttttttttcttttcaatctaTCCACTTAATTCAGGGTGTTTGTACTAATCTGCTGTTGCTACTGTATTATCCTGAAATCACCTCTGAGTATGACGGCTTGTAAAAGTCCTAATGCATATTTTTCCGGATTTTGAGTTTCTGCAAGTTAcagcatttttgcttttttgactCACCAGTGATGAAATAGGAGCTGTTACTCACTGTTTATCCGCGTGTCAGTTCTGTggcttttgtttgctttgttttgtttaagtTTCGTTCGATGCTACACTAGTTTTGCCATGTAGCAATTGCACTGTGCAATATTTGACCGTATGAGGATGGGGGAAGTGTAACTCTCGGATGTGACGTCTTTACAGTTTGCGATAGTGTATCCTCTCTAGTTCTCAGTGACTTGGATGTGACTGGGCTCCGTCACATTAAGCGGGTTTTCCAGGCGACTCTTTTTGGTGAGT
>TU126682
AGTCGGTGAGATCAGCGCAGAGGGAAGGAGCTCGGAGATGAAGCGGAGCTCGTTTCCCGGTTAGAGTCGCGGCTCCGCCGCCCCACCGAGCGCAGCGCAGCGCACCGCACCGCACCGCCATGCCCGGGACTGCGTGCGGTTTCTCTGAGCGCTGATGCGGGTTTGTGGAGTTTGACACGCGCGAGACGCTGGTGCTGTTGCTATGTTATGATCAGGCGCGAGCTCTCCGTCTCCAGTTGTGCAGGACAAGATGGCAGCAGTGCACACAGATGTACACGCTATGAGTTATAATACGAGTGTTTAAAATGTCCGGAGAAACATTGGAGCTAACCAACTGTTACTCTGCGTGAAGGTATGGCCTCACAAGTCTTGGTCTACCCACCACATGTTTATCAAACTCAGACAAGTGCCTTTTGCAGTGTGAAGAAACTCAAAGTCGAACCCAACAACTGTGTTTACCATGAGAGGGCCTTCCCACTGACTTTTTTGAATGGTAGAACTCTTGGCGTTGGACAGCCAACGAAATTTGCACCGACGTACAAGACACGGGACTTTGCAGGGGGCAGACACCGTGGGGACTTTCCAGTGCAGACTGTCGCTGTACAAGGTGTGCAACGACAACCAACCAGTGCGGCAGCACATCACCAAGAAAGAGGTGTCCCGTTACAGGGCAAAGAGCCGAAACATCTGGAAAAAGG
>TU126683
gaggtaacactttctataaaGCTGATATCGTTAAAGATTTATGGCTGTgcttataattcattatttggtagcattagaatttttaaaaatacttaaaaatgcATAATGCCTTATACATCTCTCATAACACAGTGGAATTATAGGAACATAAATGTtgctttttataattataaagaaTTCTCAGAATTGATTTAgaaataagcaaacaaacattAAGAGCCTTAAATATTCCAAACCTTTGagtaatattttagattttagtttctgattacattttgtaaagaaatttattattgggaatatttttttttcctaaattgGAGACCATTAAGGCTCAGTAACTACAGAGCACACATTACATTCGGAATGAATTAACCAAATCTATGatccttaaaataaaataaaataaaataaaatgcagttaaaTGTCTGGATGTCTAGAAATGAATCCGGTTTTTTGGCACCTAATTTCCAGAGACATTAGTTAGATTTCTGTGTAAAGAAATTATCACGAGTCATGTATTGGTTACATAATTATAGCACTGTATTGGAGCTTGATAATGAGAAGAAGTATAAACACagttataataatttatgaataTGGCGTTAAATGTCTAGACACGAATCCAGTTTTCGGCGTCAGTTTTTCCTCGCCTAATTTCCAGACACATATTAGTTAGATATCAATACAAAGTAATTTACTGACTTGTATTACTTCTGTAAGTATAGTACTATACTGGAGCTTGACATTGAGAATAATTATAACCGCAGTTATATTAATTTACGAATATGGGCTTCATATAGAAAGTGTTTCTGAAATTTATTCTCACAATCAACAGTACTTAAAATCGGAGGTTCAATCGTTTGAAAATGGCGTTGCTTacaataaaagcattaaaagctTCATCTCCATGTTCATGTCCTTCATGTGGATAAAGCTTAATACGTGTTTTTCTTGTAGCGATTgtctttttaaaacattgttaagaacagtgtgtgtgtgtgtgtgtgtgtgcctttacTGAGGAGAAATTTGTAATGAAACAAGCTGCGCTGCAAAAACAGGCTGGAAACGAGAACTGGCAGTTTAATTTCCCATTCCAGGGATCAGAATACCGAAATCAGAccattttattttgtagaaagATGATCTTTCACTTACATCAACGGTAATTTAACATTTCTTGGCTAGAGTTAATGATTATGTATCTGTTAGTGCACATGCAGGTGTTCAGTTTGCAGTTGTAGTTATAGTCCAGATTTGGAGTTGTATTTGGATCCCTGTGAAATGGCCTTCACCAGCAAATCTGTCTCCATTAATGCATCTGATATTGTTGCAAAAATGACtgtacttttattttcatacacttTTCCCACTAATCAACCTACTGAaagactttttttattattattattat
>XM_034305475.1
GCAGCTGAGAGTCGGTGAGATCAGCGCAGAGGGAAGGAGCTCGGAGATGAAGCGGAGCTCGTTTCCCGGTTAGAGTCGCGGCTCCGCCGCCCCACCGAGCGCAGCGCAGCGCACCGCACCGCACCGCCATGCCCGGGACTGCGTGCGGTTTCTCTGAGCGCTGATGCGGGTTTGTGGAGTTTGACACGCGCGAGACGCTGGTGCTGTTGCTATGTTATGATCAGGCGCGAGCTCTCCGTCTCCAGTTGTGCAGGACAAGATGGCAGCAGTGCACACAGATGTACACGCTATGAGTTATAATACGAGTGTTTAAAATGTCCGGAGAAACATTGGAGCTAACCAACTGTTACTCTGCGTGAAGGTATGGCCTCACAAGTCTTGGTCTACCCACCACATGTTTATCAAACTCAGACAAGTGCCTTTTGCAGTGTGAAGAAACTCAAAGTCGAACCCAACAACTGTGTTTACCATGAGAGGGCCTTCCCACTGACTTTTTTGAATGGTAGAACTCTTGGCGTTGGACAGCCAACGAAATTTGCACCGACGTACAAGACACGGGACTTTGCAGGGGGCAGACACCGTGGGGACTTTCCAGTGCAGACTGTCGCTGTACAAGGTGTGCAACGACAACCAACCAGTGCGGCAGCACATCACCAAGAAAGAGGTGTCCCGTTACAGGGCAAAGAGCCGAAACATCTGGAAAAAGGCAGGAGCAGCGGTGGAGCTACAGGGGCATCTGGAGGGGTCAGGGGCGAGGACAACGGGAGTAGTGGGGGAGAAGGAGTTGCCGGTGGAGGGGCTGACGAAGACAAGGAAGAAGACAACTGTAGTTCTAACTTGCCGGATGGTTCCCAGCGATGTGGTTTGAAACGTAAGAGCGAGGAGCTGGAGAACCAGGGAAACGCCATGCAGATAGTGGAGGACCTGTCAATGTTGCCTGCAATGTTGCAAACGAATGTGGGGAACCCGCCAGTTGGGGTCCCGGCAGCCGTGGCAGCGGGGCCAGTAAAGCAAGGAGGTGGAACTGGCAACGGGGATGGCGACTACCAGCTGGTACAACATGAGGTGCTTTGTTCGATGAAGAACACCTATGAGGTGCTGGACTTCCTTGGCCGTGGTACCTTTGGTCAGGTGGTCAAATGCTGGAAACGGGGCACCGGTGAGGTGGTGGCGGTAAAGATCCTGAAAAATCACCCGTCCTACGCGCGGCAGGGCCAGATTGAGGTCGGCATCTTGGCCCGTCTGAGCGGAGAGAATGCGGACGAGCATAACCTGGTGCGGGCTTTCGAGTGCTTCCAGCACCGTAACCATACCTGCCTTGTGTTCGAGATGCTTGAGCAGAACCTATATGATTTCCTCAAGCAGAACAAGTTCAGCCCACTGCCTCTAAAGGTGATACGGCCCATTCTTCAGCAGGTTGCTACCGCCCTGAAGAAGTTGAAGGCCATGGGACTGATCCATGCCGATCTGAAGCCTGAGAACATTATGCTTGTGGATCCTGTCCGGCAGCCGTACCGGGTGAAAGTCATAGACTTTGGTTCCGCCAGCCATGTCTCCAAAGCCGTTTGTTCCACGTACCTCCAGTCGCGGTACTACAGggCTCCGGAGATCATCCTGGGCCTGCCGTTTTGTGAAGCCATAGACATGTGGTCACTGGGCTGTGTGATAGCGGAGCTGTTCCTGGGCTGGCCCTTGTACCCCGGGGCGCTGGAGTACGACCAGATCCGCTACATCTCGCAGACGCAGGGTTTACCCGGAGAGAACCTGCTGAACCTGGGGACGAAGACGTCTCGCTTCTTCTGCAGAGAGTCTGACTCACAGTACGCTGCGTGGAGACTGaagTCCACAGAGGAACACGAGGCAGAAACTGGGATGAAATCGAAGGAAGCCAGAAAGTATATTTTCAGCTGTTTGGATGATATTGTGCATGTGAATTTAGTGATGAATCTGGAAGGCTGTGACTTGTTGGCTGAGAAGGTGGATCGTGGAGAGTTCGTGCTCTTGCTAAAGAAGATGCTATGGATCGACGCGGAGAAGAGAATCGTCCCCGGTGAAGTCCTCAACCATCCCTTCGTCACCATGCAGCACCTGCTCGACTTTCCCCACAGCAATCATGTGAAGTCGTGTTTCCACATCATGGACGTGTGCCGGCCGCGACCCGGAACCTACGACGGCGTCAACCGCAACAAAGCATCGTTCACGAGACCGGCCACGACCTCGGCGCCCAACCTCACCGTGCCCTACAGCAAGATGGCCGCCGTGCACACGCAACCTTTGGCTCCGTCTGCTCCCTCCGTCATGCATCCTGCGATCTCGCTCCAAACAGGAAGTGCTCAGTTTGGGGACTCATTTCAGCAAGCGCTCATCATCTGCCCGCCGACCATCCAAGGTCTCCCTCCCAACCCCAACAAGCCGGCGGGTTACTCGGTGCGAATGGAGAGCACGGTTCCACTGGTGACGCAGGCCCCCGCCATCCAGCCTCTACAGATCAGACCAGGCGTCATCACACAGCAAGCCTGGTCCAATCGGGCGCAGCAGATCCTGGTACCGGCCTGGCAGCAGGTGACGCCGGTGGCGTCCGATTCTATGGCAGGACCACAGAGGCTGGCAGACTGGGGGAAAGTCCGGCCTCACGGGAACCACTACAGCTCCATCCTGCCCCACCCCCAACCTCTGTTAGCCAATCACATGACAGCCATGTCAGCGCACCAGCCAATCAGCATCGGTATCGCTCATGTGGTGTGGCCGCAGCCGGCGGCCAACAAGAGAAACAAGCCCTGTGCAAACAGggCTAACTTCTCacacaacagcaacacacacacctcggcGTGCCATTCCCCGAAGACCACCAACGGTCGCAAACGCACTGAGGAAGTGGAGGGTCAGTGTCCTGAAACGGAAGATTGTGTGGTGGAGGCGGAGTCACAGGCGGAGtcacaggaggaggaggaggaggagcctGCGTGCTGTAAGGTAGAGGTAGAGGTGGAGGCGGAGTCGAACGGGCTGGGCGTGTCGGAGAAGCAGAGGCAGGCCGTGACAGCCGACACACCGAGTCCAGCAGGCAGCGTGATCAGCATCAGCAGcgatgaagaggaggatgaagaggagccGGGAGCGCAGAGGCACTCAGTAGAgtgtaaAGGCAGTCCGGAGTGTGAGGCGTGTCGGAGTACGCTGAATATGGAGCGTGTGTGTTCTCTCAGCAGTCCCGACTCCAGCCTCAGTACCAGCTCATCTGCATCGGTGCAGTCCAGCACCTCACCCTGCAAGAGACCcaacagcatgtCTGAGGACGAGCGAGAGAGCGGCTGTGATACGGTAGACGGCTCGCCTGCCTCCGACTCCTCCGGTCGAGCGGACAGTCCGTTCCTGGAAAGCCGTTTCATCGCTGACGGGAATCAGAACGTAAAAGCCACGTGGCGCGCAGAGACGGAGATGAGCAAAGCACCTGTACGGACCATGGTGGTGCCTCCCATGAGGGTGCAGAATAACAACAACGAACCCACGGCCAGGACGGGTACAGAACGTTTACATCACTGTATATCAGACAGAAATGGAAAACAGCTACGTGTGCTGTGTCTGTTAAGCGTAGATATCGCTGTTTTCAAAATGTAGATCACGCTACAACTCTGAACAACAAactggagattttttttaatctgacttCAACTGTAATCAGAGTTCTGTAGCGCTGAACATGGCTTAAACATTTAACCGCTGATTAAAACCCTAACCCAGGATTAATTCTGATTGTCTAAAAATGTCAGCGCTAACGATGCTTCTCATGAGATTGATTGTTTATTAATCTTATATCTTGCcttgagtggaaaaaaaattaagaaatctTTTGTTTTCGGAACAGTTTATCTAATATACCTGACCATTTCACAAACCACAAACCAAATTAATCCCTAAATTTAAAGATTAAAGTAAT

Function

symbol description
hipk3 Enables protein serine/threonine kinase activity. Involved in mRNA transcription; negative regulation of apoptotic process; and protein phosphorylation. Located in cytosol; nuclear body; and plasma membrane.

NR:

description
PREDICTED: homeodomain-interacting protein kinase 3-like isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
TU126679 False 485 lncRNA 0.39 2 29659641 29677509
TU126682 False 698 TUCP 0.54 2 29702152 29713992
TU126683 False 1418 lncRNA 0.31 2 29620799 29661699
XM_034305475.1 True 3937 mRNA 0.55 16 29668907 29714001

Neighbor

gene id symbol gene type direction distance location
spon1a spon1,spon1a,LOC107741890 coding downstream 141367 29398604 ~ 29479432 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding downstream 251248 29345335 ~ 29369551 (-)
ppfibp2a LOC108264606,LOC108434021 coding downstream 289846 29294886 ~ 29330953 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding downstream 415356 29192381 ~ 29205443 (-)
LOC113526432 cdyl2,LOC106562298 coding downstream 768163 28808107 ~ 28852636 (-)
lrch3 lrch3,LOC103027580 coding upstream 13089 29727090 ~ 29766747 (-)
luzp2 luzp2,LOC107746562,LOC107739427,LOC107656854 coding upstream 257466 29971467 ~ 30064366 (-)
tspan4a tspan4,LOC106561924 coding upstream 423010 30137011 ~ 30256084 (-)
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding upstream 641520 30355521 ~ 30359530 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding upstream 713179 30427180 ~ 30433055 (-)
LOC113526826 NA non-coding downstream 340616 29273077 ~ 29280183 (-)
G106951 NA non-coding downstream 417955 29202007 ~ 29202844 (-)
G106772 NA non-coding downstream 815369 28805033 ~ 28805430 (-)
G106713 NA non-coding downstream 841781 28764739 ~ 28779018 (-)
G106705 NA non-coding downstream 859062 28761518 ~ 28761737 (-)
G107191 NA non-coding upstream 10113 29724114 ~ 29724377 (-)
G107210 NA non-coding upstream 51375 29765376 ~ 29844857 (-)
G107217 NA non-coding upstream 208741 29922742 ~ 29923193 (-)
G107510 NA non-coding upstream 595846 30309847 ~ 30311846 (-)
G107532 NA non-coding upstream 649626 30363627 ~ 30391458 (-)
si:dkey-151j17.4 NA other downstream 2460700 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3012460 26569085 ~ 26608339 (-)
G105376 NA other downstream 3379794 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 4071871 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 4541287 25043786 ~ 25079512 (-)
G107525 NA other upstream 629530 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1014043 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 1071592 30785593 ~ 30849697 (-)
G107803 NA other upstream 1102578 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 1205183 30919184 ~ 30989204 (-)

Expression


Co-expression Network