G107800


Basic Information

Item Value
gene id G107800
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30811047 ~ 30826087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127460
AATCAGTGATTGATTTAATAGAAGCTCAGAGCAGATTGTGCTGCTGTACTGAAACCTGCAGGATTTAGAAagcaatattttaaacaaactaaaaaaaaagaaaatcacacaaaacaACCCCAGCAGGAGCTACAGCTGCAGTTATTTTATTAACCGGCTTTATTAAAAACCCTGATGAAAGGGACACACGTCTGTAAGGCTTCGCTATGCGCATGCTGCTGCAGTCTTCAGGATTGTTTCAATAACAAGACCGTAGATACAGAAAGTACACAGACATCACCTGATAACTGAaaatgaaggagtgtgtgtgtggaacacaCCTGACAGGGCCACGCTGCGTTCACCTGAGGAGCTCAGACACAAATAACACCCCCAGTGTGAACAGCAGCACTCGAGGAACTCACATTAACACCAGCAGCAGAGCACACGGAGGACATGatcgagagcgagagagaagaACTGTACAACAGAAATGAAGGAATGATCCTCTCGAGCTCGTCTGCTCATCACTCAGGAAGCTTCACATTGAACTTGGACTTTGGTTTGAGGAAATGAAATTCACACGAAGTCGATTCAGGATGGAATGTTAAGAGtgcaaaggaaaagaaaaaaaaggtttaatctAAAAGTGCTGGTGGCCTTCGAAGCGGACGTAGACGTCAGACGCTTAAGGGCTccagttataaaataaaactcggGGGTTTAGACGAGGTGTTGCTCTAAAACACGGAGCTGGAATCGTAGATTAGTTTTATTACACTGCTGTAAACTCTGAAGCAGAAACCCGCTGCACCAGCTGAACAGAAACGCCACCCTGAAACACGTCACGTCTCTTTCTACTCACACACCTGCCACGTGTTGCACGATTCTGGTGATAACCTGCTGCGCTGGATTGTTGTCATTGCTGTGAAGTTAGTGGCTGTGTGTCGCTGTGATGTcacagggggcggagctagCACACTTTCACCATCAGctcctaaaaataaaactactttCTCTATAGCGATTTTAACAACAGCCTTtgtcacgaagcagctttacTCGCTCACTTTTCAGCGCCATGTTACTGAGACATCGAGTGTAGAAGCAGTGGAGACGGAATAAACGccggactcaaagtcccagaatgcaatgcagctacacGACTCGGCTCGTTAGCGATGGAGGAGATGACGAGCGATGGCGATGGTGCTGACGGTGGTGTTGgtgtgaaagttgaagctttggaagctgatgtgtttgagcagagtgtacagagagactgagagactaaagcgccgctgcatcgctctctttccgcacggcattgtgggtaatgtaggaaatcaGTGGTAAGTAGAAATAGAGCAGCATGGCCatgaaagaaatttaaacttaaaaataagtaaaatttgttgcaaaatAAATCCTGGACGCTGTCGAAGATCAcgttataattataaatgtaatatgcaAATTTTTAGGGCGGAGTTTTCCTTTAGGTTAAACTGTAATTCAGCGTGTAAACgttgttaaaggtgcagtttgtcatttttaaaagtgtcttACGATGTTTACCATTCACATCGTTTACAAAACCGTGATTCGCAACATGAACATGTGACGCAGCCTGTaaattagccccgcccccagaGTGATCAAAGGAGGAGGGGCTGCTGTTTCCTATAAGCACAATTCTCCTacgagtttttttttaattttaaatcaaCGGAAAACAACGTTTTCATTCGATGTTAAAAACTAAGAACGCATTTCTTCCTGTAGAAATCTGTACATTCGAATTAAACGGTTAATTACTGACACTAATTGGTTAATTGTTAATGAATCAATAAACATGATGCCTGCAGTGTGCTGCtgtgattagattagattagatttagttTAGACAGATGAACAGGGAGACAATCCAAACTGCTACTTATGGTTATCCAATTAACCAActagtttaattaattaacgaGATGAGAAATTGTGAGAATCTACTTTGGTGCAAACGAACATTTTAACAGCTCGTAAACTCGAGTGTCACGGCAAATCTACGAAGTTCAACTGGTGCAACTTAAAATAAACGTCTCGCtacttttttattacataatcaGTGCGCTGATCaaaaagggggcgtggcttgtTCCTTTTATCAGAACTGAACCAGGCGGATCAAGTGACGTCGGCCCGTTATGTCTCGTTACTAAGAAATCGGATCACTGCAATAAAACTAAAAGTGACAACAGAGTACAGGGAATAAGAGAAAAAACtagaaacatggtggtggtagcgcTTGGTTTGACTAGCCCCTCCCCCCACTTTTAGTCCCATCCATCACACACTGGTTCTTCAGAACAGAGTTCATAGATAGATCAcccgtgtacacacacacacacacacacacacacacacacacacaaacagacacaaacacatctctctctctctctctctctcggtgtgtgtgtgtgtgaggtgatggACAGCACTAGCGTTTGGACAGCTCGTTGGATAACCAGTCCAGTCCTTCATACAGCCCGGTTCCCTGTGTAGCGCACGTGGCCTGAACGTACCACTGcagagacaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127460 True 2649 lncRNA 0.43 2 30811047 30826087

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.2 LOC108264169 coding downstream 6551 30792940 ~ 30804496 (-)
pdp2 pdp2,LOC108423909 coding downstream 50868 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 55957 30740467 ~ 30755090 (-)
caps2 caps2 coding downstream 100324 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 185714 30614083 ~ 30625333 (-)
LOC113524884 LOC108264165 coding upstream 24317 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 31842 30857929 ~ 30898090 (-)
gemin7 gemin7 coding upstream 135276 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 161168 30987255 ~ 31068479 (-)
cntn5 cntn5,LOC107691883 coding upstream 281603 31107690 ~ 31236932 (-)
LOC113526678 NA non-coding downstream 95594 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 341144 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 387709 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 404083 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 419589 30363627 ~ 30391458 (-)
G107805 NA non-coding upstream 2064 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 9547 30835634 ~ 30884613 (-)
LOC117597590 NA non-coding upstream 74478 30900565 ~ 30908021 (-)
LOC117597523 NA non-coding upstream 170186 30996273 ~ 30999390 (-)
G107967 NA non-coding upstream 447125 31273212 ~ 31273477 (-)
bbs10 bbs10 other downstream 78988 30728044 ~ 30732059 (-)
G107525 NA other downstream 466171 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1097046 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3650948 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4202708 26569085 ~ 26608339 (-)
LOC113524890 LOC108264167 other upstream 93097 30919184 ~ 30989204 (-)

Expression


Co-expression Network