G107805


Basic Information

Item Value
gene id G107805
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30828151 ~ 30829653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127468
CattgttttactatttttatagattttttttttttgagttggAAAATGGCGTACAGCTTTGAAGAAACTACAGTAAAAGGTTGTTCGTTCAACGGCAGGCCAACCACGAACCTGCCAACCAAGCAACAGACACCAGAAGCGAGAAGTGAACTTTTACGTGGTTTTTTGTGGTTGCTTCTGGAATCTAGGGCTTAATTGGCAGGTCAGTGCAGACCTGGCGCTGTCCACTGCAGACCCACTGGACTCCGAGTGCAGACTGCAGGGGGGCGTCCCGTGCCCTCAGGGAGGGCGTGGCCACCCCACATGACGTCTGACACGGGGCGCAGAAGGACCGAGTGCCACACCCCTTGGCAGATGTGTTTTaactcctcatcctcctccagaGAGGAAAGATGCAAGCGGTGGCTACATGGCCAAATCCTCCTGGAGCAGCAGATCTGAGGAGGAGAAAcacaacaatattattattcattattcattataacaATGAAgataataaagaaatgaaactgaaaaagcACAAATTCCCGACACTCACCACGAAGCGCTCTCAGTTTCAGCTCCTTCTGCAGAATGAAGAAGtcaag

Function

NR:

description
collagen alpha-1(XIV) chain isoform X4

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process
GO:0031012 extracellular matrix cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU127468 True 587 lncRNA 0.48 2 30828151 30829653

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.2 LOC108264169 coding downstream 23655 30792940 ~ 30804496 (-)
pdp2 pdp2,LOC108423909 coding downstream 67972 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 73061 30740467 ~ 30755090 (-)
caps2 caps2 coding downstream 117428 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 202818 30614083 ~ 30625333 (-)
LOC113524884 LOC108264165 coding upstream 20751 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 28276 30857929 ~ 30898090 (-)
gemin7 gemin7 coding upstream 131710 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 157602 30987255 ~ 31068479 (-)
cntn5 cntn5,LOC107691883 coding upstream 278037 31107690 ~ 31236932 (-)
G107800 NA non-coding downstream 2064 30811047 ~ 30826087 (-)
G107804 NA non-coding downstream 5794 30820709 ~ 30822357 (-)
LOC113526678 NA non-coding downstream 112698 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 358248 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 404813 30421252 ~ 30423338 (-)
G107806 NA non-coding upstream 5981 30835634 ~ 30884613 (-)
LOC117597590 NA non-coding upstream 70912 30900565 ~ 30908021 (-)
LOC117597523 NA non-coding upstream 166620 30996273 ~ 30999390 (-)
G107967 NA non-coding upstream 443559 31273212 ~ 31273477 (-)
G107803 NA other downstream 7729 30816579 ~ 30820422 (-)
bbs10 bbs10 other downstream 96092 30728044 ~ 30732059 (-)
G107525 NA other downstream 483275 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1114150 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3668052 27144888 ~ 27160099 (-)
LOC113524890 LOC108264167 other upstream 89531 30919184 ~ 30989204 (-)

Expression


Co-expression Network