G107806


Basic Information

Item Value
gene id G107806
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30835634 ~ 30884613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127470
tttgtttgttttttttcataaaTTAGTTGGATTTTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGCATCCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCCTGGCACGAAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACACGGCGGACACGTAGCTGTTGAAGGTGACGGGGCGGTTCAGCTTGATCAGCATGATGTCGTTGTCCAGGGTGGCGCTGTTGTAGCGCAGGTGACTGATGACCGCGGCCGAGTCGATGACCTGCTCGGTGCCCTCGTTGATGGCGATGTTGTGCTCGCCGAGACGCACCTGAATACGGGGCTTATAGCAGTGGCGGCCGACAGGACCCACTGGCTGTTGATCAGAGAACCGCCGCAGAAGTGGTAGCCGGGCGTTCAGAGACACGATATGCGGCAGGCTGTGCTTCTGACACTTTCGTAGCCTCCGGCGATCTTGTCGTCATCGTCCAGCGGCGCAGCGTGGACAGC
>TU127471
ctttgtctctgtttctctccctttaatgtctctctcactcccccCCGTAGGTGTATATGACGGGATCTCGGCTCAGTAAAGCGGCTGTAATGAAGGTCTGCACTGAAAGCGGCGTGCCTGCCGGTGTGGGCCGGATGTCCTCGTCGTCTTTCCTGGTGCTTTGGGAGTCTGTGATGTACACGGCGGGTGGCGTGTCTCCGGTTTATTTGGAATTCTGGGAAGTTTTATTAGAGCAGAGCTTGCACTGAGGGGTGTGTGGTTACGGTGGTGTGTATCTCGTCTGATTAcgtttgtttgattgattttgATTAGCTCTGAGGGCCAAACATAGatttacagacttttttttttttatatctatgCAACATTTTTGCCAAATAAATCACTTTAGATCTGATGTTAAACAAATCAGCTGTACATTATTCTGTATTTAGATCAGTGAAAAGTTTATCTATAttcaaataaagttttaatCTGTAACCTGTAAATCtgcatatttacattaaagGTTCAGCTGCAG
>TU127473
ctttgtctctgtttctctccctttaatgtctctctcactcccccCCGTAGGTGTATATGACGGGATCTCGGCTCAGTAAAGCGGCTGTAATGAAGGTCTGCACTGAAAGCGGCGTGCCTGCCGGTGTGGGCCGGATGTCCTCGTCGTCTTTCCTGGTGCTTTGGGAGTCTGTGATGTACACGGCGGGTGGCGTGTCTCCGGTTTATTTGGAATTCTGGGAAGTTTTATTAGAGCAGAGCTTGCACTGAGGGGTGTGTGGTTACGGTGGTGTGTATCTCGTCTGATTAcgtttgtttgattgattttgATTAGCTCTGAGGGCCAAACATAGatttacagacttttttttttttatatctatgCAACATTTTTGCCAAATAAATCACTTTAGATCTGATGTTAAACAAATCAGCTGTACATTATTCTGTATTTAGATCAGTGAAAAGTTTATCTATAttcaaataaagttttaatCTGTAACCTGTAAATctgcacatttacattaaagGTTCAGCTGCAGTTAATATATTtagatttgtttaattttcatatgtattcagttgaaataaaatatatttcagttcaaatATAAAGCTCGTGTTGCCTgtttaaaggaaatgaaaacacaaagagagaagtgataaaTTAGTTGGATTTTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGCATCCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCTGGCACGAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACACGGCGGACACGTAGCTGTTGAAGGTGACGGGGCGGTTCAGCTTGATCAGCATGATGTCGTTGTCCAGGGTGGCGCTGTTGTAGCGCAGGTGACTGATGACCGCGGCCGAGTCGATGACCTGCTCGGTGCCCTCGTTGATGGCGATGTTGTGCTCGCCGAGACGCACCTGAATACGGGGCTTATAGCAGTGGCGGCCGACAGGACCCACTGGCTGTTGATCAGAGAACCGCCGCAGAAGTGGTAGCCGGGCGTTCAGAGACACGATATGCGGCAGGCTGTGCTTCTGACACTTTCGTAGCCTCCGGCGATCTTGTCGTCATCGTCCAGCGGCGCAGCGTGGACAGC
>TU127474
ctttgtctctgtttctctccctttaatgtctctctcactcccccCCGTAGGTGTATATGACGGGATCTCGGCTCAGTAAAGCGGCTGTAATGAAGGTCTGCACTGAAAGCGGCGTGCCTGCCGGTGTGGGCCGGATGTCCTCGTCGTCTTTCCTGGTGCTTTGGGAGTCTGTGATGTACACGGCGGGTGGCGTGTCTCCGGTTTATTTGGAATTCTGGGAAGTTTTATTAGAGCAGAGCTTGCACTGAGGGGTGTGTGGTTACGGTGGTGTGTATCTCGTCTGATTAcgtttgtttgattgattttgATTAGCTCTGAGGGCCAAACATAGatttacagacttttttttttttatatctatgCAACATTTTTGCCAAATAAATCACTTTAGATCTGATGTTAAACAAATCAGCTGTACATTATTCTGTATTTAGATCAGTGAAAAGTTTATCTATAttcaaataaagttttaatCTGTAACCTGTAAATctgcacatttacattaaagGTTCAGCTGCAGTTAATATATTtagatttgtttaattttcatatgtattcagttgaaataaaatatatttcagttcaaatATAAAGCTCGTGTTGCCTgtttaaaggaaatgaaaacacaaagagagaagtgataaaTTAGTTGGATTTTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGCATCCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCCTGGCACGAAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACATTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGATCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCTGGCACGAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACACGGCGGACACGTAGCTGTTGAAGGTGACGGGGCGGTTCAGCTTGATCAGCATGATGTCGTTGTCCAGGGTGGCGCTGTTGTAGCGCAGGTGACTGATGACCGCGGCCGAGTCGATGACCTGCTCGGTGCCCTCGTTGATGGCGATGTTGTGCTCGCCGAGACGCACCTGAATACGGGGCTTATAGCAGTGGCGGCCGACAGGACCCACTGGCTGTTGATCAGAGAACCGCCGCAGAAGTGGTAGCCGGGCGTTCAGAGACACGATATGCGGCAGGCTGTGCTTCTGACACTTTCGTAGCCTCCGGCGATCTTGTCGTCATCGTCCAGCGGCGCAGCGTGGACAGC
>TU127475
ctttgtctctgtttctctccctttaatgtctctctcactcccccCCGTAGGTGTATATGACGGGATCTCGGCTCAGTAAAGCGGCTGTAATGAAGGTCTGCACTGAAAGCGGCGTGCCTGCCGGTGTGGGCCGGATGTCCTCGTCGTCTTTCCTGGTGCTTTGGGAGTCTGTGATGTACACGGCGGGTGGCGTGTCTCCGGTTTATTTGGAATTCTGGGAAGTTTTATTAGAGCAGAGCTTGCACTGAGGGGTGTGTGGTTACGGTGGTGTGTATCTCGTCTGATTAcgtttgtttgattgattttgATTAGCTCTGAGGGCCAAACATAGatttacagacttttttttttttatatctatgCAACATTTTTGCCAAATAAATCACTTTAGATCTGATGTTAAACAAATCAGCTGTACATTATTCTGTATTTAGATCAGTGAAAAGTTTATCTATAttcaaataaaGTTTTAATGTGTAACCTGTAAATCtgcatatttacattaaagGTTCAGCTGCAG
>TU127476
ctttgtctctgtttctctccctttaatgtctctctcactcccccCCGTAGGTGTATATGACGGGATCTCGGCTCAGTAAAGCGGCTGTAATGAAGGTCTGCACTGAAAGCGGCGTGCCTGCCGGTGTGGGCCGGATGTCCTCGTCGTCTTTCCTGGTGCTTTGGGAGTCTGTGATGTACACGGCGGGTGGCGTGTCTCCGGTTTATTTGGAATTCTGGGAAGTTTTATTAGAGCAGAGCTTGCACTGAGGGGTGTGTGGTTACGGTGGTGTGTATCTCGTCTGATTAcgtttgtttgattgattttgATTAGCTCTGAGGGCCAAACATAGatttacagacttttttttttttatatctatgCAACATTTTTGCCAAATAAATCACTTTAGATCTGATGTTAAACAAATCAGCTGTACATTATTCTGTATTTAGATCAGTGAAAAGTTTATCTATAttcaaataaagttttaatCTGTAACCTGTAAATctgcacatttacattaaagGTTCAGCTGCAGTTAATATATTtagatttgtttaattttcatatgtattcagttgaaataaaatatatttcagttcaaatATAAAGCTCGTGTTGCCTgtttaaaggaaatgaaaacacaaagagagaagtgataaaTTAGTTGGATTTTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGCATCCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCCTGGCACGAAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACACGGCGGACACGTAGCTGTTGAAGGTGACGGGGCGGTTCAGCTTGATCAGCATGATGTCGTTGTCCAGGGTGGCGCTGTTGTAGCGCAGGTGACTGATGACCGCGGCCGAGTCGATGACCTGCTCGGTGCCCTCGTTGATGGCGATGTTGTGCTCGCCGAGACGCACCTGAATACGGGGCTTATAGCAGTGGCGGCCGACAGGACCCACTGGCTGTTGATCAGAGAACCGCCGCAGAAGTGGTAGCCGGGCGTTCAGAGACACGATATGCGGCAGGCTGTGCTTCTGACACTTTCGTAGCCTCCGGCGATCTTGTCGTCATCGTCCAGCGGCGCAGCGTGGACAGC

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU127470 False 768 lncRNA 0.60 3 30835634 30884613
TU127471 False 520 lncRNA 0.42 2 30836501 30843492
TU127473 False 1389 lncRNA 0.50 2 30835634 30843492
TU127474 True 1777 lncRNA 0.53 2 30835634 30843492
TU127475 False 520 lncRNA 0.42 2 30836501 30843492
TU127476 False 1391 lncRNA 0.50 2 30835634 30843492

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.2 LOC108264169 coding downstream 31138 30792940 ~ 30804496 (-)
pdp2 pdp2,LOC108423909 coding downstream 75455 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 80544 30740467 ~ 30755090 (-)
caps2 caps2 coding downstream 124911 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 210301 30614083 ~ 30625333 (-)
gemin7 gemin7 coding upstream 76750 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 102642 30987255 ~ 31068479 (-)
cntn5 cntn5,LOC107691883 coding upstream 223077 31107690 ~ 31236932 (-)
G107805 NA non-coding downstream 5981 30828151 ~ 30829653 (-)
G107800 NA non-coding downstream 9547 30811047 ~ 30826087 (-)
G107804 NA non-coding downstream 13277 30820709 ~ 30822357 (-)
LOC113526678 NA non-coding downstream 120181 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 365731 30443523 ~ 30469903 (-)
LOC117597590 NA non-coding upstream 15952 30900565 ~ 30908021 (-)
LOC117597523 NA non-coding upstream 111660 30996273 ~ 30999390 (-)
G107967 NA non-coding upstream 388599 31273212 ~ 31273477 (-)
G107803 NA other downstream 15212 30816579 ~ 30820422 (-)
bbs10 bbs10 other downstream 103575 30728044 ~ 30732059 (-)
G107525 NA other downstream 490758 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1121633 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3675535 27144888 ~ 27160099 (-)
LOC113524890 LOC108264167 other upstream 34571 30919184 ~ 30989204 (-)

Expression


Co-expression Network