capn12 (LOC108264620,LOC108433431)


Basic Information

Item Value
gene id capn12
gene name LOC108264620,LOC108433431
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24705004 ~ 24727022 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913398.2
GGTGGGACACTTAAACTTCCAACAAACTTCTCCCCTTAGACTCACTCAAAACTTTGAGCTACACTGATAAGTCCTGACCTAGCTGCCTGAGCTCCTGCTGAGACATGTCGGACAGCGCCTCTGATCCGGGCTCCATTACCAATCCGAAGAAGTTTAAGAATCAGGACTTCGTGTCTCTGCGTGATGACTGTCTCCAGTCCGGCAAGCTCTTCGAGGACCCGAGCTTTACTGCTGATCAGAATTCCATTGGCATGCCGGCAGATCCGGACCCCAAAATGGCCATCAAGTGGCTGAGACCCAAGGAAATCAGCAGCAACGCTGTCTTTGTGGAAGGAACCACAGGCACTACTGATATCTGCCAGGGCCAGCTGGGTAACTGCTGGTTACTCGCTgctctctcctgtctcactATGCACCCTACTCTGTTTGAGAAAGTGGTCCCATCAGGACAAACCATAGATGAATCCTATGCTGGAATCTTCTGCTTCAGGttctggcAGTATGGTGAGtgggtggaggtggtggtggatgACAGGTTGCCCGTGCGAGGAGGCCGTCTGCTCTTCAGCTACTCGCGCACTAAGAACGAGTTCTGGAGCGCCCTGGTGGAGAAGGCTTACGCCAAgttgaTTGGCTCCTACAGCAGTCTAAAGGGAGGCAATATTTCTGAGGGGATGGAGGACTTCACGGGCGGCATTGCCTACACTCGTCCTGTTTCCTCCCGCACTCCTCCCGTCCTGTGGAGGACTCTCACTGCGGCGCTGTCCAGAGGCAGCCTACTCAGCTGCTTCATACAGGCCAAAAGTGTGAAAGAGATCGGTAGTGTGACTCCAGAGGGGCTGGTCAAAGGTCATGCCTATGCCATCACTGCCACAGATAAGGTGCACAAGAAAGCTGAGGAGGTGTTACTGGTGAGACTGAGAAACCCCTGGGGATTTGTGGAGTACTGTGGACCGTGGAGTGACAAGTGTAAAGACTGGGATGGCATAGACAGCGCAGAGAAGACCAGAATCAAATTGAACATTGAGGAAGATGGAGAATTTTGgATCGGGGTGCAGGACTTTTGCAAGCTGTTTGACACAGTGGAGTTGTGTAGTGTGGATCCTGACTGTGATGCTGGAGAGGAAGGTAATGCGACTGGCACCTCCTCATGGTCCTTGACCTCCCACAAAGGATCCTGGGTCCCCATGTGCTCTGCAGGGGGCAGCCGCAAAAATGCACGAACTTTCTGTAAGAACCCTCAGTTCCACTTGGTTCTGTCGCAGCAGGATGTGGAGGAAGTGGAGATCGACGAGGACGATTTGGATGGcggggatgatgatgatgacgttGGCACTGCAGCTCAGGCAAAGAGCAGTgtggacaaacaaaaagagaagatgaagaaatgCACAGTACTGATAGAGCTGCTGCAGAAACACCGTCGACTGAAAGACAAAGTCAACTTCCTTTATATCGGCTACCACATCTACAAAGTGCCTCCTGAGCTGCAGGACAGCACAGGTTCTTTCAACCAGCCGTTTTTTGATGCTAACCCACTGGTGGGCCGCTCTGGAAAGTATCGTAACGTGCGGGCTGTGTGGAGGAAGGTGCACTTGGACCCGGGACACTACATCATTGTGGCATCCACACAGAGGCCCAACCAGcccggggagtttttcctccgCATCTATGCCAAGAAAGGCAACACACTGGGGGTTCGTGAGATCAGCTGTCCTACTGCTATTACCAcgactgtcaTGTCAAAGCCTCCGTCACCTGAGGATCAGAGAATGGTGCAGAAGTGGTTTGATGAGGAAGCTGGACTGGATGACAAATTAAACGCTCTGGAGTTTATGAAGCTGGTCAACACAGTGCTGGAGAAGGACTACCATGTTCCTCTGGAGACCTGCAGACAACTCATTTTCACACAAGATACTGGAGGTAGAGGCAGGCTGAGTCGTGCTCAGGCCGATAATCTCCTCTCATCTCTGCAAAGTCTGCAGtcAATCTTTCTTGAGTATGACGAGGATTCTTCTGGAACCATTAGTCCTTTTGAGCTCAGTCAAGCTCTTAAAGCAGCAGgTGTGCAGTGTGATAATAACATACTACACATGCTGTGGGAGCGCTTCGGCTCTGGAGAGCAGCAGCTGCCTTTCTACATCTTCGTGTCGTGTGTTAGCAGACTGCAAGTCCTATTTGCTCTGTTTGAGTCAGAAAGCAGCCTGGAGGTCAAAAGCAGAGGCATAAACACGTGGCTGCTCAGGCTGCTGGCTGTGTGAGCGCACTCAGATGTGACACCTCAGCAGGACAGACCTGTACGGCCAGGACTATGCAGACGTCATCCACCTGGACCTGCGTTATTCCTCtttctatttcatttcatttacatcacactctctctgGGCCTTGTTCCGATCGCTTCCACCCACCCATTCACCCAACCCTCCACCACACAGGTCATATGGGTCATTCCTGTTTATGGTCCAGACACACGCGCTCagcttttgtgttttaaaatagaaGCATAATAAGACCTATGTTCTGTATTACTATATTTTGTATTAACCATACTTTTTTATTATCTGTCTGCTTTCTCACAGTTATGTTTGCTTTATTTGATTGATAcaatttttatcatatttttattactctATTGTCGTTCCACAAATATGCTACAAATCCATAAGGACCAGAAGTTActagttatttttctttattaactgATAGAATGATTAACAAGAATCAACTGCAGCCATAATACCAGTACCAGCATATCATCACATCCTCTTATAGACCTGGATGagaataaatatgtgaaatgtattaatataaacaggataaatataataaaatgatcataaataTTAAGAGTTTATTATCGCTTCCAAGTTGTGCCAAATTTCTCAGCTCCTCTAGTtaccaaaaacaaaatacaaatgtCTATAACATCCAAAATGTGATAGAgataaaaatgcaacaaaaatgctaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: calpain-9-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913398.2 True 2989 mRNA 0.48 21 24705004 24727022

Neighbor

gene id symbol gene type direction distance location
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding downstream 18754 24680767 ~ 24686250 (-)
c6h19orf47 c4h19orf47 coding downstream 30148 24667061 ~ 24674856 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding downstream 227032 24469967 ~ 24477972 (-)
tbcb tbcb,LOC107687357,LOC107662130,LOC107560142 coding downstream 263390 24436290 ~ 24441614 (-)
tmem123 NA coding downstream 271737 24427587 ~ 24433267 (-)
znf296 LOC108264426 coding upstream 12069 24739091 ~ 24750597 (-)
siae siae coding upstream 40553 24767575 ~ 24776782 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding upstream 297795 25024817 ~ 25034882 (-)
ppp1r13l ppp1r13l coding upstream 379407 25106429 ~ 25135256 (-)
rasgrp4 LOC108264291,LOC108428524 coding upstream 428160 25155182 ~ 25182107 (-)
G104320 NA non-coding downstream 170585 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 240426 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 1129325 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1191676 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1374903 23329676 ~ 23330101 (-)
G104694 hnrnpul1 non-coding upstream 386955 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 465035 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 512088 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 516450 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 1106257 25833279 ~ 25836038 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 43026 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 130329 24480302 ~ 24574675 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 966225 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 1005297 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 1094556 23590945 ~ 23610448 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 24631 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 316764 25043786 ~ 25079512 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 658303 25385325 ~ 25548928 (-)
G105376 NA other upstream 1512308 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1842063 26569085 ~ 26608339 (-)

Expression


Co-expression Network