LOC113526458 (chst1,LOC108432931)


Basic Information

Item Value
gene id LOC113526458
gene name chst1,LOC108432931
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27376837 ~ 27379548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913503.2
ACCAGCAACCCACGCGCATTATCTCATTCCCACTCAGGCAGAGATCTCAGCTGTTCTCCCGTCCTCTTTCCAGTCCAGTGCTATTATATCTCACAGTATTTCCAGACTTTTAGGGCTTTTATGGCGCTCTGTGGATCTACATCGCCTGCATCGGTCCTTCTTTTCCATCTGAATATCACCCACTTTCACTGATGCTGTCGTTGTTGCAGGCTGCGGCTCGTGACGGCTTTAACACCAGCTCGGagATTGAACAACACTGTTCACATGAGTGcctttctgaaaggaaaacGGTGTGTTGACTTGTTCCTCCTCCTCTGTGGTCACTGGAAGGCATGAATGCTCGCTCTGTGTTGCTCCCGGTCATGTCCCTGTGTGGCAGTAATGAAACGTTTCCTTCTCTGCACTCCAGACAGGACTAGATCCCGTCCGCAGAGCCTGGATGAAGTTTCCCAGCCATGCAATGTTCTTGGAAGGCTGTGATACTGCTAGCCTTGGCCTCCATTGCCATCCAGTACACGGCCATCCGGACCTTCACATCCAAGTCTTTCCAGCTCTGCCCTGTGCCAATCCAACAGAACTGCAGCCTGAGTGGCCAGGAAGCAGAAAGCCTTTTCGAGCGTGGATGCGATGAATATACTTACTTTAGTTTCAACACATCACGCAAGACCCACATCCTGGTGTTAGCCACAACTCGCAGTGGCTCGTCATTTGTGGGGCAGCTCCTGAATCAGCACTCGGATATCTTCTACCTGTTCGAGCCGCTTTACCATGTCCAGACGGCTCTGATTCCTCGTCTCTCCCACAGCCGGAATGCGGCTGACAGGCGAGTGATGCTGGGAGCCAGCCGGGACTTGCTGCGAAGCCTCTATGGATGTGACTTGCACTTTCTGGAAAACTACATCAAACCACCACCAACCAACCACACCACCGACAAGTTGTTCCGTCGCGGGGCCAGCCGAGCGCTCTGCTCCCAGCCTGTCTGTGATGCCTTCAGTCCTGGTGAGACAAACGTAGAGGAGGGTGactgtgtgaaaaagtgtgCGAGTCTCAACATGACACTTGCCGCCGAGTCTTGCCGGGATAAGCGGCATGTTGCCATAAAGATCGTTCGGGTACCTGAAATAGGGGATTTGCGGGCACTGGTGGAGGATCCACGGCTCAACCTGAAGGTCATCCAGCTGGTCAGAGACCCACGAGGAATCCTCGCCTCACGTATCGAGACCTTCCGGGACACGTACCGTCTGTGGAGGATCTGGAGGGCAACCGGAAGGAAACCCTACAACCTGGATTTGACTCAGCTGACAGTAGTGTGTGAGGACTTCTTGAGCTCGGTTTCTACAGGACTCAGCCACCCATATTGGCTTAAGGGGAAGTACATGCTGGTGCGATATGAGGACTTAGCAAGGAACCCGCTCCAGAAAACCAAGGATATCTATGACTACCTTGGGTTATCAATGGACAAAAACGTAGTAGACTGGATTCAGGCAAACACCAGGGGGAGTAATGAGCTCTTGACCAAACACAAGTATGGAACAGTGAGAGATTCGGCGGCTAACGCTGAGAGCTGGAGGCTCAAACTGTCCTTTGACATGGTAGActacacacagtctgtgtgcCAAAAGATATTACACAGGCTGGGCTATAAAAGTGTCAAGTCCGCTGAGGAACTGAAAAATATGTCCATCTCGCTTGTGGCGGACAAAGTTTTTGTACCGTTTTTATAATAAAGAGAGTTGTGAATGACtatttttgatatatttataaatgatgcCTTATGATTGGTGTTAAGGCTATTGAGTCCATCATCACATGTTCAAAATTGCACTAAAATTgtatgcagattttttttttcatctataaACAATAGcacaaaaaataatgcagagTGCAAGTCTACTGATGCAGACAGATAAAATTGTATTCACTGAAATCACTGAAAGCAAAAAGTGACATTGCTTGTCCTTTTATGCCTGGCTATTGCTTTAAGTGAATGTCGCCATATTTTCCGAGTCATACTTGTCATATTTTTCTCATCGATCCCCTGAAAAGAATGGTGATGACTCAATGTGGCAGAGATGACACACTGTATGAGAACAGTTGTACAATAAATTATGAATGTTGCAGTTTACCTTTAA
>XM_026913504.2
ACCAGCAACCCACGCGCATTATCTCATTCCCACTCAGGCAGAGATCTCAGCTGTTCTCCCGTCCTCTTTCCAGTCCAGTGCTATTATATCTCACAGTATTTCCAGACTTTTAGGGCTTTTATGGCGCTCTGTGGATCTACATCGCCTGCATCGGTCCTTCTTTTCCATCTGAATATCACCCACTTTCACTGATGCTGTCGTTGTTGCAGGCTGCGGCTCGTGACGGCTTTAACACCAGCTCGGagACAGGACTAGATCCCGTCCGCAGAGCCTGGATGAAGTTTCCCAGCCATGCAATGTTCTTGGAAGGCTGTGATACTGCTAGCCTTGGCCTCCATTGCCATCCAGTACACGGCCATCCGGACCTTCACATCCAAGTCTTTCCAGCTCTGCCCTGTGCCAATCCAACAGAACTGCAGCCTGAGTGGCCAGGAAGCAGAAAGCCTTTTCGAGCGTGGATGCGATGAATATACTTACTTTAGTTTCAACACATCACGCAAGACCCACATCCTGGTGTTAGCCACAACTCGCAGTGGCTCGTCATTTGTGGGGCAGCTCCTGAATCAGCACTCGGATATCTTCTACCTGTTCGAGCCGCTTTACCATGTCCAGACGGCTCTGATTCCTCGTCTCTCCCACAGCCGGAATGCGGCTGACAGGCGAGTGATGCTGGGAGCCAGCCGGGACTTGCTGCGAAGCCTCTATGGATGTGACTTGCACTTTCTGGAAAACTACATCAAACCACCACCAACCAACCACACCACCGACAAGTTGTTCCGTCGCGGGGCCAGCCGAGCGCTCTGCTCCCAGCCTGTCTGTGATGCCTTCAGTCCTGGTGAGACAAACGTAGAGGAGGGTGactgtgtgaaaaagtgtgCGAGTCTCAACATGACACTTGCCGCCGAGTCTTGCCGGGATAAGCGGCATGTTGCCATAAAGATCGTTCGGGTACCTGAAATAGGGGATTTGCGGGCACTGGTGGAGGATCCACGGCTCAACCTGAAGGTCATCCAGCTGGTCAGAGACCCACGAGGAATCCTCGCCTCACGTATCGAGACCTTCCGGGACACGTACCGTCTGTGGAGGATCTGGAGGGCAACCGGAAGGAAACCCTACAACCTGGATTTGACTCAGCTGACAGTAGTGTGTGAGGACTTCTTGAGCTCGGTTTCTACAGGACTCAGCCACCCATATTGGCTTAAGGGGAAGTACATGCTGGTGCGATATGAGGACTTAGCAAGGAACCCGCTCCAGAAAACCAAGGATATCTATGACTACCTTGGGTTATCAATGGACAAAAACGTAGTAGACTGGATTCAGGCAAACACCAGGGGGAGTAATGAGCTCTTGACCAAACACAAGTATGGAACAGTGAGAGATTCGGCGGCTAACGCTGAGAGCTGGAGGCTCAAACTGTCCTTTGACATGGTAGActacacacagtctgtgtgcCAAAAGATATTACACAGGCTGGGCTATAAAAGTGTCAAGTCCGCTGAGGAACTGAAAAATATGTCCATCTCGCTTGTGGCGGACAAAGTTTTTGTACCGTTTTTATAATAAAGAGAGTTGTGAATGACtatttttgatatatttataaatgatgcCTTATGATTGGTGTTAAGGCTATTGAGTCCATCATCACATGTTCAAAATTGCACTAAAATTgtatgcagattttttttttcatctataaACAATAGcacaaaaaataatgcagagTGCAAGTCTACTGATGCAGACAGATAAAATTGTATTCACTGAAATCACTGAAAGCAAAAAGTGACATTGCTTGTCCTTTTATGCCTGGCTATTGCTTTAAGTGAATGTCGCCATATTTTCCGAGTCATACTTGTCATATTTTTCTCATCGATCCCCTGAAAAGAATGGTGATGACTCAATGTGGCAGAGATGACACACTGTATGAGAACAGTTGTACAATAAATTATGAATGTTGCAGTTTACCTTTAA

Function

symbol description
chst1 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and keratan sulfate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; otic placode; retina; and retinal inner nuclear layer. Orthologous to human CHST1 (carbohydrate sulfotransferase 1).

NR:

description
PREDICTED: carbohydrate sulfotransferase 1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913503.2 True 2135 mRNA 0.48 2 27376837 27379548
XM_026913504.2 False 1971 mRNA 0.48 2 27376837 27379548

Neighbor

gene id symbol gene type direction distance location
LOC113526781 LOC108264218 coding downstream 62037 27311961 ~ 27314800 (-)
LOC113526860 LOC108443293,LOC108264217 coding downstream 73107 27298985 ~ 27303730 (-)
LOC113526686 LOC108264731,LOC108432714 coding downstream 79666 27203767 ~ 27297171 (-)
LOC113526349 lgals4,LOC108442553 coding downstream 174782 27193919 ~ 27202055 (-)
LOC113526685 LOC108264058,LOC108263899 coding downstream 190800 27175267 ~ 27186037 (-)
fkbp4 fkbp4,LOC107686573,LOC107705800 coding upstream 136132 27515680 ~ 27524516 (-)
wash1 wash1,LOC103045331,LOC107686618,LOC107564895 coding upstream 166949 27546497 ~ 27557970 (-)
ptprq ptprq,LOC108413201,LOC107705767 coding upstream 222678 27602226 ~ 27658837 (-)
otogl otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding upstream 282860 27662408 ~ 27708771 (-)
si:ch73-386h18.1 zfhx3,LOC108264658 coding upstream 354791 27734339 ~ 27768803 (-)
LOC113526487 LOC108264058 non-coding downstream 188045 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 231963 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 247665 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 269266 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 501003 26875595 ~ 26875834 (-)
G106193 NA non-coding upstream 399584 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 482292 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 565268 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 573970 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 574716 27954264 ~ 27954479 (-)
si:dkey-151j17.4 NA other downstream 216738 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 768498 26569085 ~ 26608339 (-)
G105376 NA other downstream 1135832 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1827909 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2297325 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 2241251 29620799 ~ 29714001 (-)
G107525 NA other upstream 2963983 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3348496 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3406045 30785593 ~ 30849697 (-)
G107803 NA other upstream 3437031 30816579 ~ 30820422 (-)

Expression


Co-expression Network