rec114 (rec114)


Basic Information

Item Value
gene id rec114
gene name rec114
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26667267 ~ 26691735 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913542.2
TTTCGAGGATCGTTCAGTGTTTGAAAGGTTACGTGTTAAACCGCGCACTACTACACTAGAAAGTATTTCTAAATAGTGCTCCACCAAAGGGTACCCTCATTTATACAGTGCACTTTGTAGGGCGGTAAAACTCGGATTAGGACGTAGCCAATGTTTCAAGCTTTTCCCCCTTCATCTTGTCAattcattcagaaataaaaaaaaaaatgtctgaagaAAACCCAACAACCAAAGCTTTTTGGAAGTTAAAACGTTATGGGCGTTTTCTACCAAAAGCCAAAAATGTCGGGGGAAACTCTTCATGGAAgGTGTTCGAGTCCAGTGAAAGCAAAGGCACGTTGGAGCTGACGATACTGGAATCTGGTCATCTGCTCATCTCACAGGCTCAGGAGCTGTTGGAAGGCTTCTCTCTTCTCAATGCTCAGAGCTTTCTGAAGATCCAGCAGAAATCAGACAGCCTGCTTTTCTACTTCACACTAAAGGAAGAGAGTCGTATGATACGACTACAGTTTGAGGGCAGCAGCAGGTCTGAAGCTGTAGATTTATGCAGGAAGGCAGTCGAGAGATTGAATGAATATCTGCCAGTAGGCACCCAGGAGCAGCCTGGCCCTTCATCTGCAACTCACACCACTGGAATCTCTAACCAGCAACAGCAGACTCCTGTAGCGGCACCGCAGGTGATCCATGACGTTATCCAGGAATCTCTGTCCATCAGGCAGCTTTGTCAGTATTTGCTGGGTGAGAGTGGACTGTCGCTGCCTTTGGCATATCGTCATTACACTCTGCCTCCTGGTGATATGGAAGGTCTATTGCGCCTGTGTTTGCTCGACTCTGGCTTCCCTGGTTTTGTAGAAGACGTGGAGAAAATGCTAAAAGGCTTGATCCAAGAATGAGTGATATGCTGTTGCTGTTTCGTTGGCCGAGTGAGGCAGGATATGCTTTATTAGAAATGGCCAGGAGCTTCTGCTCTCCTTGGATACCTTCATACGGTCAAGATGTGCA
>XM_026913543.2
TTTCGAGGATCGTTCAGTGTTTGAAAGGTTACGTGTTAAACCGCGCACTACTACACTAGAAAGTATTTCTAAATAGTGCTCCACCAAAGGGTACCCTCATTTATACAGTGCACTTTGTAGGGCGGTAAAACTCGGATTAGGACGTAGCCAATGTTTCAAGCTTTTCCCCCTTCATCTTGTCAattcattcagaaataaaaaaaaaaatgtctgaagaAAACCCAACAACCAAAGCTTTTTGGAAGTTAAAACGTTATGGGCGTTTTCTACCAAAAGCCAAAAATGTCGGGGGAAACTCTTCATGGAAgGTGTTCGAGTCCAGTGAAAGCAAAGGCACGTTGGAGCTGACGATACTGGAATCTGGTCATCTGCTCATCTCACAGGCTCAGGAGCTGTTGGAAGGCTTCTCTCTTCTCAATGCTCAGAGCTTTCTGAAGATCCAGCAGAAATCAGACAGCCTGCTTTTCTACTTCACACTAAAGACTCCTGTAGCGGCACCGCAGGTGATCCATGACGTTATCCAGGAATCTCTGTCCATCAGGCAGCTTTGTCAGTATTTGCTGGGTGAGAGTGGACTGTCGCTGCCTTTGGCATATCGTCATTACACTCTGCCTCCTGGTGATATGGAAGGTCTATTGCGCCTGTGTTTGCTCGACTCTGGCTTCCCTGGTTTTGTAGAAGACGTGGAGAAAATGCTAAAAGGCTTGATCCAAGAATGAGTGATATGCTGTTGCTGTTTCGTTGGCCGAGTGAGGCAGGATATGCTTTATTAGAAATGGCCAGGAGCTTCTGCTCTCCTTGGATACCTTCATACGGTCAAGATGTGCA
>XM_034305136.1
TTTCGAGGATCGTTCAGTGTTTGAAAGGTTACGTGTTAAACCGCGCACTACTACACTAGAAAGTATTTCTAAATAGTGCTCCACCAAAGGGTACCCTCATTTATACAGTGCACTTTGTAGGGCGGTAAAACTCGGATTAGGACGTAGCCAATGTTTCAAGCTTTTCCCCCTTCATCTTGTCAattcattcagaaataaaaaaaaaaatgtctgaagaAAACCCAACAACCAAAGCTTTTTGGAAGTTAAAACGTTATGGGCGTTTTCTACCAAAAGCCAAAAATGTCGGGGGAAACTCTTCATGGAAgGTGTTCGAGTCCAGTGAAAGCAAAGGCACGTTGGAGCTGACGATACTGGAATCTGGTCATCTGCTCATCTCACAGGCTCAGGAGCTGTTGGAAGGCTTCTCTCTTCTCAATGCTCAGAGCTTTCTGAAGATCCAGCAGAAATCAGACAGCCTGCTTTTCTACTTCACACTAAAGGAAGAGAGTCGTATGATACGACTACAGTTTGAGGGCAGCAGCAGGTCTGAAGCTGTAGATTTATGCAGGAAGGCAGTCGAGAGATTGAATGAATATCTGCCAGTAGGCACCCAGGAGCAGCCTGGCCCTTCATCTGCAACTCACACCACTGGAATCTCTAACCAGCAACAGCAGACTCCTGTAGCGGCACCGCAGGTGATCCATGACGTTATCCAGGAATCTCTGTCCATCAGGCAGCTTTGTCAGTATTTGCTGGGTGAGAGTGGACTGTCGCTGCCTTTGGCATATCGTCATTACACTCTGCCTCCTGGTGATATGGAAGGTCTATTGCGCCTGTGTTTGCTCGACTCTGGCTTCCCTGGTTTTGTAGAAGACGTGGAGAAAATGCTAAAAGGCTTGATCCAAGAATGAGCAAGAAGAGCTTGTATGGAATGAGGAATGCGACGCACGGTGCAGTGCATCTGTCCTGTCACATGACAGGCTGAGAGTGGGAAAGTCATAGCTGAGTGGACAACAGCATCATCGCATTATGCAACCAAGCAACGTTTAAAACAGGCCTGCCAGAACAGTCCGGGCATGCTCAGTGTGCACGACGGCAGTGTCAAAACAAATTGGCTTAAGTGAGGAGTGTTTCACGGGTCTGTGGCTACAGGGGGTGATTCCTTCCTGCCTGAGCTGGACTGGAAAGCAGCATGGGTCTCATGTAGTTAACGCTTGACTTGAATTGTAGtttgaatttgaaatattatgaatatgtttttctattttatagacataataatgtaaaagaaGACAGCTCTTCTTTTTTGcaatttaaaatattgcacaattCAAATTCTTGACATGGAAAATGATTGCTGATTATAAATGTTACTAGATATAATAAACGGACAGGAATAGTTATGAATAAATGATCACTCTTATTCATAGATATGACAGTCATACTGACTGAAAACTACTGAACTAGTGAAATGTACATTCTCCTAGTAATTTGGCTCTTTGTGTCATTGTAAAGTTCAAACTATAACAGCCCCTCTTCTCTGTGAATGACAGGCATTGTC
>XM_034305137.1
TTTCGAGGATCGTTCAGTGTTTGAAAGGTTACGTGTTAAACCGCGCACTACTACACTAGAAAGTATTTCTAAATAGTGCTCCACCAAAGGGTACCCTCATTTATACAGTGCACTTTGTAGGGCGGTAAAACTCGGATTAGGACGTAGCCAATGTTTCAAGCTTTTCCCCCTTCATCTTGTCAattcattcagaaataaaaaaaaaaatgtctgaagaAAACCCAACAACCAAAGCTTTTTGGAAGTTAAAACGTTATGGGCGTTTTCTACCAAAAGCCAAAAATGTCGGGGGAAACTCTTCATGGAAgGTGTTCGAGTCCAGTGAAAGCAAAGGCACGTTGGAGCTGACGATACTGGAATCTGGTCATCTGCTCATCTCACAGGCTCAGGAGCTGTTGGAAGGCTTCTCTCTTCTCAATGCTCAGAGCTTTCTGAAGATCCAGCAGAAATCAGACAGCCTGCTTTTCTACTTCACACTAAAGGAAGAGAGTCGTATGATACGACTACAGTTTGAGGGCAGCAGCAGGTCTGAAGCTGTAGATTTATGCAGGAAGGCAGTCGAGAGATTGAATGAATATCTGCCAGTAGGCACCCAGGAGCAGCCTGGCCCTTCATCTGCAACTCACACCACTGGAATCTCTAACCAGCAACAGCAGTATTTGCTGGGTGAGAGTGGACTGTCGCTGCCTTTGGCATATCGTCATTACACTCTGCCTCCTGGTGATATGGAAGGTCTATTGCGCCTGTGTTTGCTCGACTCTGGCTTCCCTGGTTTTGTAGAAGACGTGGAGAAAATGCTAAAAGGCTTGATCCAAGAATGAGTGATATGCTGTTGCTGTTTCGTTGGCCGAGTGAGGCAGGATATGCTTTATTAGAAATGGCCAGGAGCTTCTGCTCTCCTTGGATACCTTCATACGGTCAAGATGTGCA

Function

symbol description
rec114 Predicted to be involved in DNA recombination and meiotic cell cycle.

NR:

description
meiotic recombination protein REC114

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913542.2 False 1002 mRNA 0.46 7 26680356 26691735
XM_026913543.2 False 828 mRNA 0.45 6 26680356 26691735
XM_034305136.1 True 1543 mRNA 0.43 7 26667267 26691735
XM_034305137.1 False 930 mRNA 0.46 6 26680356 26691735

Neighbor

gene id symbol gene type direction distance location
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 135132 26515521 ~ 26532135 (-)
zgc:158464 LOC108264397 coding downstream 202322 26324381 ~ 26464945 (-)
cd276 cd276 coding downstream 374660 26194050 ~ 26292607 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 761927 25890299 ~ 25905340 (-)
LOC113526366 LOC108264060,LOC108430275 coding downstream 796996 25839470 ~ 25870271 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 135289 26827024 ~ 26847963 (-)
LOC113526953 NA coding upstream 440394 27132129 ~ 27138338 (-)
LOC117597534 NA coding upstream 446512 27138247 ~ 27143595 (-)
LOC113526685 LOC108264058,LOC108263899 coding upstream 483532 27175267 ~ 27186037 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 502184 27193919 ~ 27202055 (-)
G105379 NA non-coding downstream 346497 26320032 ~ 26320770 (-)
G105219 NA non-coding downstream 579572 26087480 ~ 26087695 (-)
G105092 NA non-coding downstream 831229 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 1422023 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 1425497 25239110 ~ 25241770 (-)
G105608 NA non-coding upstream 51968 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 54384 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 96205 26787940 ~ 26788856 (-)
G105639 NA non-coding upstream 127731 26819466 ~ 26819717 (-)
G105666 NA non-coding upstream 183860 26875595 ~ 26875834 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 58928 26569085 ~ 26608339 (-)
G105376 NA other downstream 426262 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1118339 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1587755 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1903106 24751653 ~ 24764161 (-)
si:dkey-151j17.4 NA other upstream 453153 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 2929064 29620799 ~ 29714001 (-)
G107525 NA other upstream 3651796 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 4036309 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 4093858 30785593 ~ 30849697 (-)

Expression


Co-expression Network