pdp2 (pdp2,LOC108423909)


Basic Information

Item Value
gene id pdp2
gene name pdp2,LOC108423909
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30756449 ~ 30760179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913544.2
gtttttttttaaaaaaaacggGGTACAACACTACATTACCCAGAATGCTCTTCTAGGAAGTACGCATGCGCAGCAAACGCGGCCCCACTCGGAAAGCTACGCAGAAACCGGTTCGCTAACTAATTCGTTCATTTTCACAGatgtAGGTGCTTTAGACTCCACCCACACTGGCAGTGATGACATCAAACATGTGCACACGACTCCTGTTCCAGCTCGGCCAATCGGGTCGAGCGCTTTTCTCCGCCGGTCCTCACGCCGGTCCTGTGTGCCGTTCCGGAGTGCGGCTGGTCCAGGCGCGGTCCTGCTCGTCTCGGGGAAGGAGGTCAGGCCAAGACTCGGGTCAGAACAGAGAACATGGACTCTCTTCTGCTGGACCTGAGCTGGACTTCCAGCTGAGCCGGCTGCAGGTGGACGCTGTGCTGCGTGCTAACGAGCAGTCCGTGCGAGTTCCTGAGTTTGATGGACGTGGAGGTCTGAGTCCCGTGCTGAAGTTCGAGAGCAATCAACTCGCTGCGAATTCTCCTCTGGAGGACAGACGCAGCAGCGCCACCTGCTTGCAGACGCGGGGGATGCTGTTTGGGGTTTTTGATGGCCACGGCGGTCACGCGTGCGCTCAGGTGGTCAGTGAGCGTCTGCCTTATTATGTTTCCGTGGCGATGATGTCAGAGTCCAGCCTGGAGGATCTGGAGGCTTCGATGGAGACGGTACGGCCGTTCCCGCCGATTCTGCAGTGGTACAAACATCACAACGACCACAACTACCGCGAGTCCGCCGCTCTATACGTCAATCACTTGCGCGTCTTCTGGCAGGAGCTGCTCGCCAGCGAAGAGCACGGAGACGGAATGAAGCCCAGCGACGCCCTCAGCTATGCTTTCCAGCGCCTGGACACGGATCTTTCGCTGGAGGCTCAGGTGCCACTCGCGAGCGATCTGATGCGGAACACGGCGGTCCAGGCGGCTTTCGCAGGGTGCACGGCTTGTCTCGCTCACGTAGGACCCGAAGGCATTCATGTAGCGAACGCTGGCGATTGTCGAGCCGTGCTCGGCGTTCAGGAAAGCGACGGGAGCTGGAGCGCGCTGCCTCTGTCTCGGGATCACAACACGACCAACGCAGCCGAAGTGGAGCGAGTGCTGTCTCAGCACCCGGCTAGTGAGCGGCAGACGGTCCTCGTGGACGACAGGCTGCTCGGCGTGTTGATGCCACTGCGAGCTTTCGGAGACGTTCGGTTTAAATGGAGCCGCGAGCTGCAGCAGAGCGTGTTAGAAAACGGAGGCTGTGACTCAGAGGCGCTGAATCTTTATCAATACGCGCCGCCTAATTACCTCACGCCGCCGTACCTCGAGGCCACGCCCGAGATCACTTATCACCGCCTGCGCCCTCAGGACCGCTTCCTGATCCTGGCGTCGGACGGTCTGTGGGACGAGATGGACAGCGAGGAGGCGGTGCGGCTGGTGGCGGAACATTTAACCGGCATCCACCTGCAGGCTCCGGTCTCGGCCAGCCAGCGCCAGCTCAGCCTGGGACAGATGCACCAGCTGCTGCTGCAGCGCCGCGCCCGCGCCACGCCCGCACTCGACCTGAACGCCGCTACGCACCTGATTCGCCACGCTCTCGGGACAAACGAGTACGGAGAGATGGACCAGGAGAGACTGGAAGCCATGCTGGCGCTCCCAGACGACCTGGCACGCATGTATCGCGATGACATCACCATCACCGTGATTTATTTCAACTCGAGTCTCAACAAAACGTCACGGAATAATTTGTGACAATCCTccgttaaacaaacaaacaaagctgtaaacaaacaaacctgtAAACAAACATATATCTCTGATAAACACTGAACAACAAACACTGAGACCTTCAGCCTCGTTTTGTGCGCGATGGATgaagtttaaatataaaattaaagcgTTGAGATGCAGAAAGAATCACGGTTTTATTGCGTCATGGGCCGGAAGATCAAAGCTTGTGAGAGTTGAGATTCACAGCCCTGTGTGCTGAGattattttatcacattttatgatttatgatgatGTTATAACAATAAAGAACTGACACTCGTTCTTAACAGGAAGTGAACCTCGGCGTCTCGAGTCAGCGCCAGCACGTCATCGCTCCCGGCGCTTTGCGTGTGACGTTTGTTTACACGCGAAAAAGTGACATTTAATCTCAGGTGCACAAACTGTGCAGATAAATGTACTGCCCATGAAAACAACGTGCTGGGGGTTAAATCTCATAATGTGATGTAACGTATAACTGAGTGacgatttatttaatttgtttcacttttattctaattaaattctaaattatcgcatatttcacatgtttattaaaTCTTTCCTGAATTTTTCTCTTGTGAACTCGTTCAAGTTTGGATTTTGTGCTGATGTACgttcttctttttaagaaaaattacatcattttgtTGCTTCTtcgttttaattttaattttaattttaatttttttgttgctgcttgtttaCCAGAAGGACACTGTATGAAgctgatgtggaaatgtttacattcacagcatggTTCTGTTTCATTACTGCGTTATGTTCAGTGGAAACTGTGTTCATGTGTCTCCTTCGATcgtttttcattctgtttcttCCGCTGGATGTTTCCTTCGACGCTGTTTTGACGTTGCACTTTAGTGGAAGCTGCTGTAAAACCCCGCGtctgtgtgttcaggagtgaAGTGCTGGTGATATGATGGTCATTAGATGCGACTCGTAGCTATTAACCAGGTCGTGTTTCATGCTGTGaaattcattctgttttttatgACTGCATTTACGGTTTTAAAAAGTTCATCAGCCATAATGTACAAAGCCAGGAATAATTAAAGGATATGAAGGCATCGTTTCAAATA

Function

symbol description
pdp2 Predicted to enable [pyruvate dehydrogenase (lipoamide)] phosphatase activity. Predicted to be involved in positive regulation of pyruvate dehydrogenase activity and protein dephosphorylation. Predicted to be active in mitochondrion. Orthologous to human PDP2 (pyruvate dehyrogenase phosphatase catalytic subunit 2).

NR:

description
pyruvate dehydrogenase [acetyl-transferring]-phosphatase 2, mitochondrial-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913544.2 True 2882 mRNA 0.51 2 30756449 30760179

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.10 LOC108264154 coding downstream 1359 30740467 ~ 30755090 (-)
caps2 caps2 coding downstream 45726 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 131116 30614083 ~ 30625333 (-)
si:dkey-88e18.8 LOC108264158 coding downstream 147242 30604089 ~ 30609207 (-)
cfap161 cfap161 coding downstream 158705 30592721 ~ 30597744 (-)
si:dkey-30c15.2 LOC108264169 coding upstream 32761 30792940 ~ 30804496 (-)
LOC113524884 LOC108264165 coding upstream 90225 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 97750 30857929 ~ 30898090 (-)
gemin7 gemin7 coding upstream 201184 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 227076 30987255 ~ 31068479 (-)
LOC113526678 NA non-coding downstream 40996 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 286546 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 333111 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 349485 30368887 ~ 30406964 (-)
G107533 NA non-coding downstream 387261 30368338 ~ 30369188 (-)
G107800 NA non-coding upstream 50868 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 60530 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 67972 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 75455 30835634 ~ 30884613 (-)
LOC117597590 NA non-coding upstream 140386 30900565 ~ 30908021 (-)
bbs10 bbs10 other downstream 24390 30728044 ~ 30732059 (-)
G107525 NA other downstream 411573 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1042448 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3596350 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4148110 26569085 ~ 26608339 (-)
selenot1b LOC108264179,LOC108429894 other upstream 25414 30785593 ~ 30849697 (-)
G107803 NA other upstream 56400 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 159005 30919184 ~ 30989204 (-)

Expression


Co-expression Network