zgc:158464 (LOC108264397)


Basic Information

Item Value
gene id zgc:158464
gene name LOC108264397
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26324381 ~ 26464945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913596.2
GTCAAGCTCGTTAAAGTTTGATTAGAGGGTTTGGAGGGTTAAGATGTTACAGAATTACAGTTTCAATCTGGCAACTCTGTTGGGAAAACTCACAGCAACCTGGCAACCTGGCGCGCAGAGAAACGTGGGCTGAGCGCTCGGCGACGCGCTCACACAGCCGGAGTTTCCACACACCAGAAAGTGATCGCGGGTCAGAAACGGGCGCGCGAGCTTGGACCGAGAAGTGTTGCGGATTAACCGAGTTTAACGCATACAGGGAGGCTCACGCGGAGCCACGGAAACCCGGAACGGAAACCTCGGCGTGTCGGAGCGGTGAGCGATGCGCTGGCACCATGGCCAAATGGTTCAAGGAGCACCTGGGATTCAAGAGCGCCAAAGCCTCGCCGCCGGCGCCTCCGAGACCGGACTACCGGCACTGCCACGCGGCCGCCGCAGCAGCTTACCAACACGCGGGCACTGGCACCGGAGGCGCGAGCTACCCGAGCCCCGCGCAGCCGGATATCCTCGCCGCGTACAAACTCCAGAAAGAGCTGGACTTCGAGGACCCGTACGCGGCCGGCGCCAACACTCCTTTCTCGGGCGCAGCGCTCTCGGAGGTGAAGTACGTGTCCCCGAAACACCGGCTCATCAAAGTGGAGACGCTGGAGAGGAGCTGCGCGAGCCCGAGTGCTGGCGGAGGCGGCGgcggaggtggtggtggtggcggCGGTGGCAGCGCGAGCCAGGCAGCTGCAGGGAGCGCGAGATCTCCCACATCCCCACCCGCCGAGCACGAGACTAAGCAGGACAAGGTGATCATCCTGGAGGACTACGCGGACCCTTTCGATGCTGCGGATCAAGCAGGTGGCACCCAGAGCAGTGTGGAGAAGCCGGTGGAGAACGATGGCTACATGGAGCCGTACGAGGCTCAGAAGATGATGGCTGAGATCCGAGGGAGTCGTGGTGTAAAGGACGGCCCAGCTCGGCAGCTTCCCTTGTACGACACCCCGTACGAGCCTGCGGAGAATGGTGGGGATTCGGACCCTCTATGTTCACGCGAGAGCAGACTGCCTCAGGATGATGAGAGGCCGCCGGAGGAGTACGATCAGCCCTGGGAGTGGAAGAAAGAACGCATCTCGAAGGCCTTCGCAGTAGAGATTAAAGTGATAAAGGACCTCCCGTGGCCTCCTCCTGTTGGCCAGCTCAGCACTACGTCCCCCCTGGTGGAGGTGGTTgaggctcctcctgctcctcagCAGGCGTCCCAGCTCTCACCTGGACAGAGCGCCTCAGGCTGTGAGCAGCACCACCAGGTCCAGTTCGAGGGGGTGGAGAAAGGCAGGATGTCTCCGACGAAAGACGGGAAGTCGAGGCCACCCCAGCGCCACTCCAGCGGCTGCCTGGTCAACATGAAGATGAGTTCGGTGGAGCAGTGTATGCCGACACTGGGCGAGCGCATCGACCCCACCATGCCACTGGAGAGCcagttCTGGTATCACGGAGCAATCAGTCGAACGGACGCTGAGTCATTGCTGAGGTTGTGTAAAGAGGCCAGTTACCTAGTGAGAAACAGCGAGACCAGCAAGAACgacttctccctctctctcaaGAGCAGCCAGGGTTTCATGCATATGAAGCTGTCGCGAACCAAAGACAACAAGTACATCCTGGGCCAGAACAGCTGTCTGTTCGACAGCGTGCCGGAGATCATCCACTTCTACTCCAGCCGCAAGCTGCCAATCAAAGGAGCCGAGCACATGTCCCTCCTGTACCCCGTGGCCATCCGGACACTTTAGCCTCCAGTCTAGAAGTTGATCGGTGAACAAACGGCGTGTAGATGCCTGTTACAGATGGATTGAATATCCATCATCTGCATTTACAGCAGCATCTTATAATGTTTGATGACTGATATGGTGTGTGTTAAGCCTTTGTGAATGGCTGCTTGTACACAGTGCTACTGGAACACTCTCCAGCAGAGACTGGAAGACTTCAGAGGCTTTAAAAAAGCCCTCACCTTCCCACTGATGGTGTCAAATCTCAAGTCTTTTTTAATTTACGCCGAGTCATACCTTCAGCTCAGTGGATTATGGAGACCACACTGACCACACAAAGCAGACTAATCTGTAAATAATATGTTTTCCAGCAGCTCTATTGCGCACCCTCATCCCTTTCCGCTGACATTTCCTGTTCATGTGGACTTAAAACCCTGAGCTTTGGCCTGCACCCACACTTTGATTGTTTGGTCTCATGCATACTGTAATAAAATCTCACGCAAACCA
>XM_026913597.2
GGTCAAGCTCGTTAAAGTTTGATTAGAGGGTTTGGAGGGTTAAGATGTTACAGAATTACAGTTTCAATCTGGCAACTCTGTTGGGAAAACTCACAGCAACCTGGCAACCTGGCGCGCAGAGAAACGTGGGCTGAGCGCTCGGCGACGCGCTCACACAGCCGGAGTTTCCACACACCAGAAAGTGATCGCGGGTCAGAAACGGGCGCGCGAGCTTGGACCGAGAAGTGTTGCGGATTAACCGAGTTTAACGCATACAGGGAGGCTCACGCGGAGCCACGGAAACCCGGAACGGAAACCTCGGCGTGTCGGAGCGGTGAGCGATGCGCTGGCACCATGGCCAAATGGTTCAAGGAGCACCTGGGATTCAAGAGCGCCAAAGCCTCGCCGCCGGCGCCTCCGAGACCGGACTACCGGCACTGCCACGCGGCCGCCGCAGCAGCTTACCAACACGCGGGCACTGGCACCGGAGGCGCGAGCTACCCGAGCCCCGCGCAGCCGGATATCCTCGCCGCGTACAAACTCCAGAAAGAGCTGGACTTCGAGGACCCGTACGCGGCCGGCGCCAACACTCCTTTCTCGGGCGCAGCGCTCTCGGAGGTGAAGTACGTGTCCCCGAAACACCGGCTCATCAAAGTGGAGACGCTGGAGAGGAGCTGCGCGAGCCCGAGTGCTGGCGGAGGCGGCGgcggaggtggtggtggtggcggCGGTGGCAGCGCGAGCCAGGCAGCTGCAGGGAGCGCGAGATCTCCCACATCCCCACCCGCCGAGCACGAGACTAAGCAGGACAAGGTGATCATCCTGGAGGACTACGCGGACCCTTTCGATGCTGCGGATCAAGCAGGTGGCACCCAGAGCAGTGTGGAGAAGCCGGTGGAGAACGATGGCTACATGGAGCCGTACGAGGCTCAGAAGATGATGGCTGAGATCCGAGGGAGTCGTGGTGTAAAGGACGGCCCAGCTCGGCAGCTTCCCTTGTACGACACCCCGTACGAGCCTGCGGAGAATGGTGGGGATTCGGACCCTCTATGTTCACGCGAGAGCAGACTGCCTCAGGATGATGAGAGGCCGCCGGAGGAGTACGATCAGCCCTGGGAGTGGAAGAAAGAACGCATCTCGAAGGCCTTCGCAGAGATTAAAGTGATAAAGGACCTCCCGTGGCCTCCTCCTGTTGGCCAGCTCAGCACTACGTCCCCCCTGGTGGAGGTGGTTgaggctcctcctgctcctcagCAGGCGTCCCAGCTCTCACCTGGACAGAGCGCCTCAGGCTGTGAGCAGCACCACCAGGTCCAGTTCGAGGGGGTGGAGAAAGGCAGGATGTCTCCGACGAAAGACGGGAAGTCGAGGCCACCCCAGCGCCACTCCAGCGGCTGCCTGGTCAACATGAAGATGAGTTCGGTGGAGCAGTGTATGCCGACACTGGGCGAGCGCATCGACCCCACCATGCCACTGGAGAGCcagttCTGGTATCACGGAGCAATCAGTCGAACGGACGCTGAGTCATTGCTGAGGTTGTGTAAAGAGGCCAGTTACCTAGTGAGAAACAGCGAGACCAGCAAGAACgacttctccctctctctcaaGAGCAGCCAGGGTTTCATGCATATGAAGCTGTCGCGAACCAAAGACAACAAGTACATCCTGGGCCAGAACAGCTGTCTGTTCGACAGCGTGCCGGAGATCATCCACTTCTACTCCAGCCGCAAGCTGCCAATCAAAGGAGCCGAGCACATGTCCCTCCTGTACCCCGTGGCCATCCGGACACTTTAGCCTCCAGTCTAGAAGTTGATCGGTGAACAAACGGCGTGTAGATGCCTGTTACAGATGGATTGAATATCCATCATCTGCATTTACAGCAGCATCTTATAATGTTTGATGACTGATATGGTGTGTGTTAAGCCTTTGTGAATGGCTGCTTGTACACAGTGCTACTGGAACACTCTCCAGCAGAGACTGGAAGACTTCAGAGGCTTTAAAAAAGCCCTCACCTTCCCACTGATGGTGTCAAATCTCAAGTCTTTTTTAATTTACGCCGAGTCATACCTTCAGCTCAGTGGATTATGGAGACCACACTGACCACACAAAGCAGACTAATCTGTAAATAATATGTTTTCCAGCAGCTCTATTGCGCACCCTCATCCCTTTCCGCTGACATTTCCTGTTCATGTGGACTTAAAACCCTGAGCTTTGGCCTGCACCCACACTTTGATTGTTTGGTCTCATGCATACTGTAATAAAATCTCACGCAAACCA
>XM_026913600.2
TCAAGCTCGTTAAAGTTTGATTAGAGGGTTTGGAGGGTTAAGATGTTACAGAATTACAGTTTCAATCTGGCAACTCTGTTGGGAAAACTCACAGCAACCTGGCAACCTGGCGCGCAGAGAAACGTGGGCTGAGCGCTCGGCGACGCGCTCACACAGCCGGAGTTTCCACACACCAGAAAGTGATCGCGGGTCAGAAACGGGCGCGCGAGCTTGGACCGAGAAGTGTTGCGGATTAACCGAGTTTAACGCATACAGGGAGGCTCACGCGGAGCCACGGAAACCCGGAACGGAAACCTCGGCGTGTCGGAGCGGTGAGCGATGCGCTGGCACCATGGCCAAATGGTTCAAGGAGCACCTGGGATTCAAGAGCGCCAAAGCCTCGCCGCCGGCGCCTCCGAGACCGGACTACCGGCACTGCCACGCGGCCGCCGCAGCAGCTTACCAACACGCGGGCACTGGCACCGGAGGCGCGAGCTACCCGAGCCCCGCGCAGCCGGATATCCTCGCCGCGTACAAACTCCAGAAAGAGCTGGACTTCGAGGACCCGTACGCGGCCGGCGCCAACACTCCTTTCTCGGGCGCAGCGCTCTCGGAGGTGAAGTACGTGTCCCCGAAACACCGGCTCATCAAAGTGGAGACGCTGGAGAGGAGCTGCGCGAGCCCGAGTGCTGGCGGAGGCGGCGgcggaggtggtggtggtggcggCGGTGGCAGCGCGAGCCAGGCAGCTGCAGGGAGCGCGAGATCTCCCACATCCCCACCCGCCGAGCACGAGACTAAGCAGGACAAGGTGATCATCCTGGAGGACTACGCGGACCCTTTCGATGCTGCGGATCAAGCAGGTGGCACCCAGAGCAGTGTGGAGAAGCCGGTGGAGAACGATGGCTACATGGAGCCGTACGAGGCTCAGAAGATGATGGCTGAGATCCGAGGGAGTCGTGGTGTAAAGGACGGCCCAGCTCGGCAGCTTCCCTTGTACGACACCCCGTACGAGCCTGCGGAGAATGGTGGGGATTCGGACCCTCTATGTTCACGCGAGAGCAGACTGCCTCAGGATGATGAGAGGCCGCCGGAGGAGTACGATCAGCCCTGGGAGTGGAAGAAAGAACGCATCTCGAAGGCCTTCGCAGCTCTGCTTTGTTATGACTGCATTAGCAGCAAAGGAGAAGGCAGAGGATCGGCTCGGAGAAGAGTCAACACCTCCAAATCCCTCACAGTCCAGTTCGAGGGGGTGGAGAAAGGCAGGATGTCTCCGACGAAAGACGGGAAGTCGAGGCCACCCCAGCGCCACTCCAGCGGCTGCCTGGTCAACATGAAGATGAGTTCGGTGGAGCAGTGTATGCCGACACTGGGCGAGCGCATCGACCCCACCATGCCACTGGAGAGCcagttCTGGTATCACGGAGCAATCAGTCGAACGGACGCTGAGTCATTGCTGAGGTTGTGTAAAGAGGCCAGTTACCTAGTGAGAAACAGCGAGACCAGCAAGAACgacttctccctctctctcaaGAGCAGCCAGGGTTTCATGCATATGAAGCTGTCGCGAACCAAAGACAACAAGTACATCCTGGGCCAGAACAGCTGTCTGTTCGACAGCGTGCCGGAGATCATCCACTTCTACTCCAGCCGCAAGCTGCCAATCAAAGGAGCCGAGCACATGTCCCTCCTGTACCCCGTGGCCATCCGGACACTTTAGCCTCCAGTCTAGAAGTTGATCGGTGAACAAACGGCGTGTAGATGCCTGTTACAGATGGATTGAATATCCATCATCTGCATTTACAGCAGCATCTTATAATGTTTGATGACTGATATGGTGTGTGTTAAGCCTTTGTGAATGGCTGCTTGTACACAGTGCTACTGGAACACTCTCCAGCAGAGACTGGAAGACTTCAGAGGCTTTAAAAAAGCCCTCACCTTCCCACTGATGGTGTCAAATCTCAAGTCTTTTTTAATTTACGCCGAGTCATACCTTCAGCTCAGTGGATTATGGAGACCACACTGACCACACAAAGCAGACTAATCTGTAAATAATATGTTTTCCAGCAGCTCTATTGCGCACCCTCATCCCTTTCCGCTGACATTTCCTGTTCATGTGGACTTAAAACCCTGAGCTTTGGCCTGCACCCACACTTTGATTGTTTGGTCTCATGCATACTGTAATAAAATCTCACGCAAACCA
>XM_026913601.2
CTCGTTAAAGTTTGATTAGAGGGTTTGGAGGGTTAAGATGTTACAGAATTACAGTTTCAATCTGGCAACTCTGTTGGGAAAACTCACAGCAACCTGGCAACCTGGCGCGCAGAGAAACGTGGGCTGAGCGCTCGGCGACGCGCTCACACAGCCGGAGTTTCCACACACCAGAAAGTGATCGCGGGTCAGAAACGGGCGCGCGAGCTTGGACCGAGAAGTGTTGCGGATTAACCGAGTTTAACGCATACAGGGAGGCTCACGCGGAGCCACGGAAACCCGGAACGGAAACCTCGGCGTGTCGGAGCGGTGAGCGATGCGCTGGCACCATGGCCAAATGGTTCAAGGAGCACCTGGGATTCAAGAGCGCCAAAGCCTCGCCGCCGGCGCCTCCGAGACCGGACTACCGGCACTGCCACGCGGCCGCCGCAGCAGCTTACCAACACGCGGGCACTGGCACCGGAGGCGCGAGCTACCCGAGCCCCGCGCAGCCGGATATCCTCGCCGCGTACAAACTCCAGAAAGAGCTGGACTTCGAGGACCCGTACGCGGCCGGCGCCAACACTCCTTTCTCGGGCGCAGCGCTCTCGGAGGTGAAGTACGTGTCCCCGAAACACCGGCTCATCAAAGTGGAGACGCTGGAGAGGAGCTGCGCGAGCCCGAGTGCTGGCGGAGGCGGCGgcggaggtggtggtggtggcggCGGTGGCAGCGCGAGCCAGGCAGCTGCAGGGAGCGCGAGATCTCCCACATCCCCACCCGCCGAGCACGAGACTAAGCAGGACAAGGTGATCATCCTGGAGGACTACGCGGACCCTTTCGATGCTGCGGATCAAGCAGGTGGCACCCAGAGCAGTGTGGAGAAGCCGGTGGAGAACGATGGCTACATGGAGCCGTACGAGGCTCAGAAGATGATGGCTGAGATCCGAGGGAGTCGTGGTGTAAAGGACGGCCCAGCTCGGCAGCTTCCCTTGTACGACACCCCGTACGAGCCTGCGGAGAATGGTGGGGATTCGGACCCTCTATGTTCACGCGAGAGCAGACTGCCTCAGGATGATGAGAGGCCGCCGGAGGAGTACGATCAGCCCTGGGAGTGGAAGAAAGAACGCATCTCGAAGGCCTTCGCAGTCCAGTTCGAGGGGGTGGAGAAAGGCAGGATGTCTCCGACGAAAGACGGGAAGTCGAGGCCACCCCAGCGCCACTCCAGCGGCTGCCTGGTCAACATGAAGATGAGTTCGGTGGAGCAGTGTATGCCGACACTGGGCGAGCGCATCGACCCCACCATGCCACTGGAGAGCcagttCTGGTATCACGGAGCAATCAGTCGAACGGACGCTGAGTCATTGCTGAGGTTGTGTAAAGAGGCCAGTTACCTAGTGAGAAACAGCGAGACCAGCAAGAACgacttctccctctctctcaaGAGCAGCCAGGGTTTCATGCATATGAAGCTGTCGCGAACCAAAGACAACAAGTACATCCTGGGCCAGAACAGCTGTCTGTTCGACAGCGTGCCGGAGATCATCCACTTCTACTCCAGCCGCAAGCTGCCAATCAAAGGAGCCGAGCACATGTCCCTCCTGTACCCCGTGGCCATCCGGACACTTTAGCCTCCAGTCTAGAAGTTGATCGGTGAACAAACGGCGTGTAGATGCCTGTTACAGATGGATTGAATATCCATCATCTGCATTTACAGCAGCATCTTATAATGTTTGATGACTGATATGGTGTGTGTTAAGCCTTTGTGAATGGCTGCTTGTACACAGTGCTACTGGAACACTCTCCAGCAGAGACTGGAAGACTTCAGAGGCTTTAAAAAAGCCCTCACCTTCCCACTGATGGTGTCAAATCTCAAGTCTTTTTTAATTTACGCCGAGTCATACCTTCAGCTCAGTGGATTATGGAGACCACACTGACCACACAAAGCAGACTAATCTGTAAATAATATGTTTTCCAGCAGCTCTATTGCGCACCCTCATCCCTTTCCGCTGACATTTCCTGTTCATGTGGACTTAAAACCCTGAGCTTTGGCCTGCACCCACACTTTGATTGTTTGGTCTCATGCATACTGTAATAAAATCTCACGCAAACCA

Function

NR:

description
PREDICTED: SH2 domain-containing adapter protein F isoform X1

GO: NA

KEGG:

id description
K23697 SHB_D_E_F; SH2 domain-containing adapter protein B/D/E/F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913596.2 True 2258 mRNA 0.57 7 26324381 26464944
XM_026913597.2 False 2256 mRNA 0.57 7 26324381 26464945
XM_026913600.2 False 2182 mRNA 0.56 7 26324381 26464943
XM_026913601.2 False 2090 mRNA 0.57 6 26324381 26464938

Neighbor

gene id symbol gene type direction distance location
cd276 cd276 coding downstream 31774 26194050 ~ 26292607 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding downstream 419041 25890299 ~ 25905340 (-)
LOC113526366 LOC108264060,LOC108430275 coding downstream 454110 25839470 ~ 25870271 (-)
LOC113526369 LOC108264860 coding downstream 977417 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 1004688 25304736 ~ 25319693 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 50576 26515521 ~ 26532135 (-)
rec114 rec114 coding upstream 202322 26667267 ~ 26691735 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 362079 26827024 ~ 26847963 (-)
LOC113526953 NA coding upstream 667184 27132129 ~ 27138338 (-)
LOC117597534 NA coding upstream 673302 27138247 ~ 27143595 (-)
G105379 NA non-coding downstream 3611 26320032 ~ 26320770 (-)
G105219 NA non-coding downstream 236686 26087480 ~ 26087695 (-)
G105092 NA non-coding downstream 488343 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 1079137 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 1082611 25239110 ~ 25241770 (-)
G105608 NA non-coding upstream 278758 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 281174 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 322995 26787940 ~ 26788856 (-)
G105639 NA non-coding upstream 354521 26819466 ~ 26819717 (-)
G105666 NA non-coding upstream 410650 26875595 ~ 26875834 (-)
G105376 NA other downstream 83376 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 775453 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 1244869 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1560220 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1613013 24623516 ~ 24711368 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 104140 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 679943 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3155854 29620799 ~ 29714001 (-)
G107525 NA other upstream 3878586 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 4263099 30728044 ~ 30732059 (-)

Expression


Co-expression Network