foxf1 (foxf1)


Basic Information

Item Value
gene id foxf1
gene name foxf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28229438 ~ 28233387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913722.2
GCGGCTCTCTAACAGGAGAAAACTTTACGCAGAGATGCCAGATGTTGGTGTGAGCCCACCCCGTGGCGTGGGGAAGAAAAGGGGCGGAGACTGGGCGGTCCCTTACGCGCTTCATGACGTCTTCATGATGGTCAAGAGCTTGGCTAGGCGCTGATGGCCACAGATAAGTAAAGGGCGATCTGCAAAGCGAACGAGACCAGACGGAACCGAAGCCGTATGAGAAGCTCCCTGTCTGTGTTAACTGTGGACAGTGCCATTACAGGACTTTTCCAGCTCGAGGACAGTGAAGCTACCGAACTACACGCGACAGCTTGTCCACGGCGCGCTTGTCTTTCTTGGAGcgtcaggatttttttttttttttgtgggtcaTGACACGATCTGGTTGATCGCTGGTTTCAGAACTTTCGGCGATATCGCTACAGGTGGAGGATTTTcctttcttaaaaaataataaataaaaagaaaagccgTGTCGAGCGCACAGAACTGATGACGGCCgaggtccagcagccttccgtgcAGCCGCCTGCCCAAAGCAGCCCGATGTCCGCGCCCGAGAAAGCGCACGCTCAATCGGCGGCCATGGACGCGGCCTCCTCCACCACCAAAGCCAAAAAGACAAACGCCGGCATCCGACGTCCTGAGAAGCCGCCGTACTCGTACATCGCGCTCATCGTCATGGCCATCCAGAGCTCTCCGACGAAGCGTCTTACACTCAGCGAGATCTACCAGTTCCTCCAGAGCCGCTTCCCGTTCTTCCGCGGCTCTTACCAGGGCTGGAAAAACTCCGTGCGCCACAACTTGTCCTTAAACGAGTGCTTCATTAAGCTGCCCAAAGGGCTCGGGCGGCCAGGGAAGGGCCACTACTGGACCATCGACCCTGCGAGCGAGTTCATGTTCGAGGAGGGCTCTTTTCGGCGCAGACCACGCGGATTCCGGCGCAAATGTCAGGCGCTCAAGCCGTCCATGTACAGCATGATGAACGGCCTCGGGTTCAACCACCTACCCGAGTCTTACAACTTCCAGGGCAGCGGCGGAGGCCTGTCTTGCCCGCCAAATAGTTTATCTTTAGAGAGCGGGATTGGGATGATGAACGGACATTTGGCAGGTAACATGGAGGGAATGGGCCTGGCGGGACACTCCATGTCTCATCTGTCGGCCAACAGTGGACATTCCTACATGGGGAACTGTACGGGATCCACGGGGAGCGAGTATCCCCACCACGACAACTCAGCCTCGCCCCTGCTGTCCGGCGGCGGAGTCATGGAGCCGCATCCCGTTTACTCGAGCACGACCTCGGCGTGGGCGCCCGCGCCGTCAGCTTCCCTTAATAACGGAGGGTCTTACATTAAACAGCAGCCACTGTCTCCGTGCAACCCCGGCGCAAATCCTTTACAGCCGAGCTTACCGACACACTCTCTGGACCAGTCATATCTGCACCAGAATGGACACAGCACGACCGACCTACAagGTATTCCCAGGTACCATTCCCAATCTCCCAGCATGTGCGACCGGAAGGAGTTCGTCTTCTCTTTCAACGCCATGACATCTTCAACTATGCATTCACCTGGAAGCGGCTCTTACTATCATCACCAACAAGTCGCCTATCAGGACATCAAGCCTTGCGTGATGTGACAGCACTGGTGATGAATTAGAGACTGATTCAACACTGATGAAGGAGCCACTGAGCCTCTGCGGTGGGAAAAAAGCAACACACGGGCCTGAAAGAGCGCtggaaaagaaggagaaaaaggacAACAGCGCTCACAATGACAGGCTACAACCATAGAAAAATGCGAAATGATGCAAACTCGGTACAAAAGCATGAACAGGAGAAAAGCCGGGTACCTTAACTTCACCGTGTCGGGTGTTTCCACCACCTTTCACAAACAGCCTTTAAGGTGATGTGTGCCACATTTATTCAAGCTATTTCCAAATCAGACTGCGCAAATTCTGAACTAATCTGCATCTCAAtgccaaaaagaaaagaaaagcaaagcaagaaagaaagaaaacccgCTTGGTACTAACTCTGCTGGCGGATGGATACCACTTGAGTGTAGCTTGTGAGTGACTGTCCGTGTTGTCATTCCGGGGAACCAGGATTCAATCGAGTTTTTCAGTGAAAACTGTATtacgagttttttttttataggcctatataaatataattttcattCAGGACAAGCTGTTCGATATCTGATCAGAGTAAATTTGAATTCTGTCTAATCAGTGCAAGTCAAAGTGTAACCAGGTTATCACATGGAAGGAAAACGAAGGCACTTTTAAACCTTAAAGCGCaactttatttattctgtttatatttggATTGTATAATTATAGCCATAGTATTGAACGCTTTATCGGCAATATTTGCCCAGACGCTGTCTTATTCAGTGTAAACAGAAAATGAAGGTTTAATGTAAGCactgttattttgtttgtttggtgttttattattattttttgtatatcCGTATTGACACGAGTCATTTTCcagcactgtaaaaaaaaaattgtatatggTGTAGGTAATATCTTTTTAGTAGGCATCTTTTACTTTCTATTTTCGTGTCTTTAGACATTAGGTCATCTACGCACGATATgtataaaattgtataaaaacaataatggcATGCAGTTGGAATTAAACTGTTCAAAAGTA

Function

symbol description
foxf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in nucleus. Is expressed in gut; head; swim bladder; and swim bladder bud. Human ortholog(s) of this gene implicated in persistent fetal circulation syndrome. Orthologous to human FOXF1 (forkhead box F1).

NR:

description
PREDICTED: forkhead box protein F1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913722.2 True 2668 mRNA 0.49 2 28229438 28233387

Neighbor

gene id symbol gene type direction distance location
LOC113526564 dbndd1 coding downstream 23812 28183533 ~ 28205626 (-)
LOC113526894 LOC108263898 coding downstream 289616 27925890 ~ 27939822 (-)
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding downstream 350819 27865109 ~ 27878619 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding downstream 370077 27854836 ~ 27859361 (-)
wdr59 wdr59,LOC107686576 coding downstream 382616 27825324 ~ 27846822 (-)
irf8 irf8 coding upstream 181748 28415135 ~ 28422985 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding upstream 190410 28423797 ~ 28446938 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding upstream 215352 28448739 ~ 28452315 (-)
gse1 gse1 coding upstream 234371 28467758 ~ 28711935 (-)
LOC113526572 LOC108264241 coding upstream 536238 28769625 ~ 28774040 (-)
G106356 NA non-coding downstream 131444 28097773 ~ 28097994 (-)
G106319 NA non-coding downstream 150563 28038090 ~ 28078875 (-)
G106336 NA non-coding downstream 158568 28069599 ~ 28070870 (-)
G106269 NA non-coding downstream 261237 27967982 ~ 27968201 (-)
G106265 NA non-coding downstream 263187 27965063 ~ 27966251 (-)
LOC117597514 NA non-coding upstream 26310 28259697 ~ 28261304 (-)
G106653 NA non-coding upstream 366732 28600119 ~ 28601535 (-)
G106655 NA non-coding upstream 370926 28604313 ~ 28605437 (-)
G106656 NA non-coding upstream 372871 28606258 ~ 28608041 (-)
G106657 NA non-coding upstream 375559 28608946 ~ 28609764 (-)
si:dkey-151j17.4 NA other downstream 1069339 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1621099 26569085 ~ 26608339 (-)
G105376 NA other downstream 1988433 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2680510 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 3149926 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1387412 29620799 ~ 29714001 (-)
G107525 NA other upstream 2110144 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2494657 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2552206 30785593 ~ 30849697 (-)
G107803 NA other upstream 2583192 30816579 ~ 30820422 (-)

Expression


Co-expression Network