LOC113526572 (LOC108264241)


Basic Information

Item Value
gene id LOC113526572
gene name LOC108264241
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28769625 ~ 28774040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913747.2
CACGCGCCACTCTCCCCGAGGAGGTGCGTGGAGAAGCTTCATCTCTTCCGCAATGCTGTGCGTAGATCAGCGCGTCCGGGCAGCCTGCGTACTGCTGCTACACGGTGTGCACGCCTGACTGGCTGGAGGTTTCCTTTTGCAACAGCAAACGATtgagtgggaaaaaaagaggcaCAGAAATCTGCAGTGTCGAGGAGATGCGTTGAAGTCGCGCACgcaaacgcgcacacacacacacacacacacacacgcgcgcgcgcggaGGCAGTCGCTGTTACCTGAGCCGGTCGGTTTCATTGCCTCATCACTGCTGACCGGACAGGTTTTCCACATCAGGACTGAATTCTTTTTATGGAAACCGAAGCGACCGGGGAAGTCGCGGTCATGCTGCCTCCGAAAAGCTGCCTCCCGAGGAACTACAGCTGCATCGCAGGCTTGTTTGGGAGTCTGACCGCAAACCAGAAGATGGACGACGGCGACAAAACGGAAGGcgaagaggaggaagatgaggagaAGAAGGCCGTAAGCGGCGAGTGCGAGCCGTTAGAGATGCGCGTCGTGGACGAGAGGCCGAGGGGCCGTGAATCCCTCCCGAAGCCGCCGCCGAGTCCCGGCCAGCGCCGCCGGTGCAAATCCTTACCGAGCTCCGCGGAGAGAGCCAAACTGGAAGTGGCGCGGATCTGCAGCCCGTCCAGCCAGAAGAAAGTGCGCTTCGCCGACTCACTGGGTCTGGAGCTCATCACCGTGCGGCACTTCGACGACACCGACGTGCCGGAAACACCCGACCGTGTCATGGACAAGTTCAAAAAGGCGAGAGCGCTCCACCTGAACAACTTCGAGCACTCGAACGGGTACACGCAGTCCACCTTCGTGGAGACGCTGTTCACCAGTCCGGGCGCGCAACCCGACTTCCAGGAGCGGCTCCAGAGCGCCAAGGTGCTGCTGGAGTCCGTGGAGACGGACGAGTTCAGCATCTCGGGGGTCGTGCGCGTCCTGAACCTGGCGTTTGAGAAGTGCGTGACTCTGAGGTACACGCTCAACAACTGGCTAACCTTCATGGACGTGCCGGCCTCCTACGTGCTGCAGTCGAGCGACGGCATCACCGACAAGTTCCACTTCAAGATCGTCACGCCGGCGTTCTTCGACGGCAGCAGCAGCCTCCAGTTCGCCGTCCGCTACTGCGTCGGGACCGACGAGTTCTGGGACAACAACGACGGCAAGAACTACAGAGTGCGACGCCACAGGTTCAAAATCTCACCTCCGCGCGAATGGGATAACGGCTGGATCCACTTCATCTAGAGCCACTGTCTGTGATTATGATTATATGACCATTAAGGCCTGCATTGTATCTGTGGAGCCTACACTGAATCTCACATGGCTCcacatgtagtgcactgtaCAGTGCGCGTAATTGATGTATTCTCATTAGGgatgcactttttcttttccatatcAAAGCTCGGAGTATCCTCTGAGACTGATCTGATTAAATCAGCCCACAGTCTTGCACCAACTTGGGCTGAATCCTGAACGGCTCATACTGGTCATATAGGACACTAGATAGAGTGGAGGAGTCGTAGGTTTATAATGCACCTActgttgagtgcaaaagtttgcatcccctatTGGTTTCTTATCTAGAAATTCCATGTTggtataatgatttttttttttcttactgaaaCATTATCGAGACTGAGCCTAAAGCTGGCTGTTCACTGTGCGTcgtttaagattattacttaaTCATGATTACTCAGTAAAATCCTGGCAGAAATCTGTAACAAACTGtgcatgtcagattatacaatcAATCCTCTAAcgtagacctgtgattaaagaaaattacgtTTTCTGCATTCTGCCCACGTCATCAGTAAGCACAATCCGGGCTCATGCAGTGACTTTGAGATGATAAAGAtattatttctgtctgtttgcaGGTTTAGTTTATGTTCTGCCATCACCACTGGCGTATCTGTAGCTGTCCCAGGAGTTTGCATCATCCAgtgccgtcctcctattggtggcttttagatgagtGCCATAGCAGCACTCACACTGTTTGTTGTTGGTTAAAGTGTCCAACACAATTTTACATCTTATTTAAGgcagaaaatgttaaaatagtCTTCAACTCCTAAGAGGTTACTAACTCAACTCCTAAGTAGTCACGTTATGAGTCAGTGGGagtgaataaaaacagcagaaggCCAGAGAGGTCAGTAAAATAATCCAAACTAAACAGTGGGAGATTTGGAAAAAGTCTTAGAAGCAAATGCAAGtccacaaatatatatataactctCCTAACCTACACTTCTCGGCTTATATGGGTActgtaaaaacataaaatcctGACATGCGTTAAATGCCTTATTGTTTTCCTCATCCTCAAGCAGgggaatgcaaacttttgcacacaagTGTATATAAAGTCTAAACTCAGCCAAGGTATCTGACGTATCTAATAGCCTGCTATTCTATTTTACAGAGTGACTTCTGTGCTGAGTGACTTCCTGTTTTAGATGAAATGCACTGCTGTTGTGAAAGGTGATGTGGCTTTGAGGCCTTGTGACATGTTTTCGTCCGCGTACGTTGTGTGTACAGTCGTTCTCTTCCATGATACACAGCTAGAAAAGTGTGCAGAGCCTCAGTCCATTTTACGCATGGTGGGCAGAATATATGTCAATGCTTATAATATAGCTATGTATACTCATGCGCTGATGACACAGTCATTTAGAAAGGGCTAGGAAGATAAATCTGAGAAGAACACGACAGCTGGAGAGTCGCTCTAATAAACCTGATGAGATGTTTAGTAAGAATGAGTCAAGGGAGCAAGTGGATGTCTTTTAGTGAAGCTCCATACATGAGGGAAGAACTGTCTTTGAGATTACATCACAAGACCTTTAACATCAATCGACTATCTCCGGACTGATTACTAGACTCTCAGAATAACTGGAAAAGTTTATCTCCTACACTCAACAACCTGTCCTGAAGTTTCCATCTCATCACAAGGCGAGGTAAGGGATGGTTCCAGGGGAAAATCGAATTTGCATAGATTTTCCATTCACTGTAAATGCACTTGATCAGCCAAGACACATTTGCTTTCCTTGTTTTTGTTCCTTTACCGTTTCCACATAAGAGCCATGAGGCTAAAAGCAAGAGGAAGCTCAATCAAGAAGCACCAAGCAAAATCATGCTgaactcatcacacactcgccaGCCTGGTCCAATCACTGACCTCAGATAACCTTGTGCAGGTTTTAGCATAAATGATTACATGTCTATTGCATAACTGTAGCCAGCTGAAcataaaatgaatgattttaattttatatacattgcAAAAACAAACTTGTTCAGTTACTGAACACTAGAAATAGCATTATGAATGTAAGACTGAGATTATTTGACCCAATTTTGTCAAGTAGGTTAATTGTGTAATGACTTCAGCATTAGATTTGCTTAGGGGCCATAAACACCGACTTCCTGCATAAGATTGTGTAAATTcgattttaaatgtttaatttaatttaatttgtataatttcCGTCGCATTAAACCAGAACACAAAGTGCCGCATTCCCGATGCATTTATCATGCAGCTGTTATGGTTATATACAatagagtgcaaaagtttgcacccccttggtgagagaaggggaaaaagaaCCTCATGATACGGTAACTTCAACACAACTAGAAGTTAAAACAAGTTTCAAagacaaaccaacaaaaaacaGATTGAAAAGAACTCaaagaaagaagtgaaaaaagttTTGTGATGAATGAGGAAATGCGTCACATCTGATAGAGTGACATCATGAGCCCTGTTTGGACGGGATTAGTTTCACTGTGCGATGTCtgtcatacatttttttcacacgTCACGTCTgagataacatttttaaaatgaaatagtgCAGGAGGGAtcagatgtatttatttatttatttatttatttatttgagcaTCTAACCTTGGACATTTAAGGAATTTACAGTGATACACAggctcattcatttatttatggaaatcTAAATATTGCATGATATTGTGGTATGTGTGAATATAAAGTGGTTTATGACTGTACCTAATATTATACCAGCCTCTTCAATCAGCCTTCAGGATCACGCTCTTCTgattgattttgttttcttgcCCCGGCTAATGGACTCTCGATGTAGGCAGCATGGAGATGGAGTTGTACGACCCAAAGCAACAAAGTCGTTGAGAGACAACTAAAAGCACTCATGTTTTCATGATTCAGGAAGTAGACACGTCCGCTAGGTGACTAAATGTggcaagtagcagcagtcaaaaAAAAGCCACGAAGATATCTATCTGGACAGGACAAAATTTATCAGACCATGTCAGAGTtggttaacaaaaaaaaaaaaaaa
>XM_026913748.2
TGACCATGGGCACGCGCCACTCTCCCCGAGGAGGTGCGTGGAGAAGCTTCATCTCTTCCGCAATGCTGTGCGTAGATCAGCGCGTCCGGGCAGCCTGCGTACTGCTGCTACACGGTGTGCACGCCTGACTGGCTGGAGGTTTCCTTTTGCAACAGCAAACGATtgagtgggaaaaaaagaggcaCAGAAATCTGCAGTGTCGAGGAGATGCGTTGAAGTCGCGCACgcaaacgcgcacacacacacacacacacacacacgcgcgcgcgcggaGGCAGTCGCTGTTACCTGAGCCGGTCGGTTTCATTGCCTCATCACTGCTGACCGGACAGGTTTTCCACATCAGGACTGAATTCTTTTTATGGAAACCGAAGCGACCGGGGAAGTCGCGGTCATGCTGCCTCCGAAAAGCTGCCTCCCGAGGAACTACAGCTGCATCGCAGGCTTGTTTGGGAGTCTGACCGCAAACCAGAAGATGGACGACGGCGACAAAACGGAAGGcgaagaggaggaagatgaggagaAGAAGGCCGTAAGCGGCGAGTGCGAGCCGTTAGAGATGCGCGTCGTGGACGAGAGGCCGAGGGGCCGTGAATCCCTCCCGAAGCCGCCGCCGAGTCCCGGCCAGCGCCGCCGGTGCAAATCCTTACCGAGCTCCGCGGAGAGAGCCAAACTGGAAGTGGCGCGGATCTGCAGCCCGTCCAGCCAGAAGAAAGTGCGCTTCGCCGACTCACTGGGTCTGGAGCTCATCACCGTGCGGCACTTCGACGACACCGACGTGCCGGAAACACCCGACCGTGTCATGGACAAGTTCAAAAAGGCGAGAGCGCTCCACCTGAACAACTTCGAGCACTCGAACGGGTACACGCAGTCCACCTTCGTGGAGACGCTGTTCACCAGTCCGGGCGCGCAACCCGACTTCCAGGAGCGGCTCCAGAGCGCCAAGGTGCTGCTGGAGTCCGTGGAGACGGACGAGTTCAGCATCTCGGGGGTCGTGCGCGTCCTGAACCTGGCGTTTGAGAAGTGCGTGACTCTGAGGTACACGCTCAACAACTGGCTAACCTTCATGGACGTGCCGGCCTCCTACGTGCTGCAGTCGAGCGACGGCATCACCGACAAGTTCCACTTCAAGATCGTCACGCCGGCGTTCTTCGACGGCAGCAGCAGCCTCCAGTTCGCCGTCCGCTACTGCGTCGGGACCGACGAGTTCTGGGACAACAACGACGGCAAGAACTACAGAGTGCGACGCCACAGAGTGACTTCTGTGCTGAGTGACTTCCTGTTTTAGATGAAATGCACTGCTGTTGTGAAAGGTGATGTGGCTTTGAGGCCTTGTGACATGTTTTCGTCCGCGTACGTTGTGTGTACAGTCGTTCTCTTCCATGATACACAGCTAGAAAAGTGTGCAGAGCCTCAGTCCATTTTACGCATGGTGGGCAGAATATATGTCAATGCTTATAATATAGCTATGTATACTCATGCGCTGATGACACAGTCATTTAGAAAGGGCTAGGAAGATAAATCTGAGAAGAACACGACAGCTGGAGAGTCGCTCTAATAAACCTGATGAGATGTTTAGTAAGAATGAGTCAAGGGAGCAAGTGGATGTCTTTTAGTGAAGCTCCATACATGAGGGAAGAACTGTCTTTGAGATTACATCACAAGACCTTTAACATCAATCGACTATCTCCGGACTGATTACTAGACTCTCAGAATAACTGGAAAAGTTTATCTCCTACACTCAACAACCTGTCCTGAAGTTTCCATCTCATCACAAGGCGAGGTAAGGGATGGTTCCAGGGGAAAATCGAATTTGCATAGATTTTCCATTCACTGTAAATGCACTTGATCAGCCAAGACACATTTGCTTTCCTTGTTTTTGTTCCTTTACCGTTTCCACATAAGAGCCATGAGGCTAAAAGCAAGAGGAAGCTCAATCAAGAAGCACCAAGCAAAATCATGCTgaactcatcacacactcgccaGCCTGGTCCAATCACTGACCTCAGATAACCTTGTGCAGGTTTTAGCATAAATGATTACATGTCTATTGCATAACTGTAGCCAGCTGAAcataaaatgaatgattttaattttatatacattgcAAAAACAAACTTGTTCAGTTACTGAACACTAGAAATAGCATTATGAATGTAAGACTGAGATTATTTGACCCAATTTTGTCAAGTAGGTTAATTGTGTAATGACTTCAGCATTAGATTTGCTTAGGGGCCATAAACACCGACTTCCTGCATAAGATTGTGTAAATTcgattttaaatgtttaatttaatttaatttgtataatttcCGTCGCATTAAACCAGAACACAAAGTGCCGCATTCCCGATGCATTTATCATGCAGCTGTTATGGTTATATACAatagagtgcaaaagtttgcacccccttggtgagagaaggggaaaaagaaCCTCATGATACGGTAACTTCAACACAACTAGAAGTTAAAACAAGTTTCAAagacaaaccaacaaaaaacaGATTGAAAAGAACTCaaagaaagaagtgaaaaaagttTTGTGATGAATGAGGAAATGCGTCACATCTGATAGAGTGACATCATGAGCCCTGTTTGGACGGGATTAGTTTCACTGTGCGATGTCtgtcatacatttttttcacacgTCACGTCTgagataacatttttaaaatgaaatagtgCAGGAGGGAtcagatgtatttatttatttatttatttatttatttgagcaTCTAACCTTGGACATTTAAGGAATTTACAGTGATACACAggctcattcatttatttatggaaatcTAAATATTGCATGATATTGTGGTATGTGTGAATATAAAGTGGTTTATGACTGTACCTAATATTATACCAGCCTCTTCAATCAGCCTTCAGGATCACGCTCTTCTgattgattttgttttcttgcCCCGGCTAATGGACTCTCGATGTAGGCAGCATGGAGATGGAGTTGTACGACCCAAAGCAACAAAGTCGTTGAGAGACAACTAAAAGCACTCATGTTTTCATGATTCAGGAAGTAGACACGTCCGCTAGGTGACTAAATGTggcaagtagcagcagtcaaaaAAAAGCCACGAAGATATCTATCTGGACAGGACAAAATTTATCAGACCATGTCAGAGTtggttaacaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 3E-like

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913747.2 True 4406 mRNA 0.45 1 28769625 28774030
XM_026913748.2 False 3166 mRNA 0.47 2 28769625 28774040

Neighbor

gene id symbol gene type direction distance location
gse1 gse1 coding downstream 57690 28467758 ~ 28711935 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding downstream 317310 28448739 ~ 28452315 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding downstream 322687 28423797 ~ 28446938 (-)
irf8 irf8 coding downstream 346640 28415135 ~ 28422985 (-)
foxf1 foxf1 coding downstream 536238 28229438 ~ 28233387 (-)
atmin atmin coding upstream 7984 28782024 ~ 28790810 (-)
cenpn cenpn coding upstream 17751 28791791 ~ 28799363 (-)
LOC113526432 cdyl2,LOC106562298 coding upstream 34067 28808107 ~ 28852636 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding upstream 418341 29192381 ~ 29205443 (-)
ppfibp2a LOC108264606,LOC108434021 coding upstream 520846 29294886 ~ 29330953 (-)
G106705 NA non-coding downstream 7888 28761518 ~ 28761737 (-)
G106682 NA non-coding downstream 60055 28707899 ~ 28709570 (-)
G106681 NA non-coding downstream 61883 28707130 ~ 28707742 (-)
G106678 NA non-coding downstream 71828 28695559 ~ 28697797 (-)
G106676 NA non-coding downstream 79651 28689455 ~ 28689974 (-)
G106772 NA non-coding upstream 30993 28805033 ~ 28805430 (-)
G106951 NA non-coding upstream 427967 29202007 ~ 29202844 (-)
LOC113526826 NA non-coding upstream 499037 29273077 ~ 29280183 (-)
G107193 NA non-coding upstream 906223 29680263 ~ 29707900 (-)
G107191 NA non-coding upstream 950074 29724114 ~ 29724377 (-)
si:dkey-151j17.4 NA other downstream 1609526 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 2161286 26569085 ~ 26608339 (-)
G105376 NA other downstream 2528620 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 3220697 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 3690113 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 846759 29620799 ~ 29714001 (-)
G107525 NA other upstream 1569491 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1954004 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2011553 30785593 ~ 30849697 (-)
G107803 NA other upstream 2042539 30816579 ~ 30820422 (-)

Expression


Co-expression Network