loxl1 (loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907)


Basic Information

Item Value
gene id loxl1
gene name loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25890299 ~ 25905340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913764.2
GAAAGAGAGTGAGTGCAGAAGAGGGGGAAATTTTGGGAGAGGTTGCAAGCAATCAGAGAGGCAAATAGAGAGCTGGAGTTGAGAAGCCGTAGATAGTTCTCACTAGACAAGCTTTGAGAGCAATGCTCTGTCCACTGACAATTCCACACCCAAACCATCAGGAAGAAGAAGGATTGTTATACAGTTGCCTGCTCTGGGATATTAGAAGTACCCTCTCCTCCTCACAGGTATGTCTGCACCAAGGACAATTCAAAGGACTAAATTTTAGCACTGCTTTTTAACTGTAAGGGCTACATATGGACACTGCAATCTCCATCTCTTTGGTTGTGTTGTGCACTTTGGATCAAGAGTCAaggattatttttctgtaatctGGACTTACGGAAATTCATTTTGGTTCTAAAGATTGTTGCTTTCCATGTAAAACTTGTGAAGATGCAGCCTGTTCTCATATCTTGGTGGGTGTGGATGTTGCTGGGCATTGTTGGAGTACAGTCACAAGCTCAGTCACAGGCTCAATCTCCTAGTCAGGGGCAAGATTCCCCATCAAATCCCTGGAGGCAAGTGATCCAATGGGAGAACAATGGACAGGTGTTTAGCCTGCTCAACAGTGGAGCTGAGTACATCCCTGCTCAAGCACAGGAAAGGGACAGAAGTCACCGAGTACTTTTAGCTAACAGCCCTAACAGAAGGTCCAGACCAAATGGAGGAAATGTGCGGAGACAGGCACCTTCCAGAGGTAACTCAGAAACCATCAGGGGCCAGGCCAGACACCCCTTTGGATTTGGACAAGTGCCAGAAAATTGGCGTCAAGGTAGTGCTGGTACTGGTACAGGTGAATCAAGTCGGTTTCAGTCATCCCAAAGCACACGTTACAGAACTTCCTCTGGttcttcttcctcatcatcctcttcctcttcatccttCAGTGTGCCATCTTACCCACAGTATCCTTTCCAACAACAGCCTCCCTATTATGCCCCATATGAACCTCTTGAACCACCATTCCAAGGAACAGGGTATTCAGCAGACCCTAGTGGAGGTTTTACAGGAGTAAGgtatggtggtggtggtggtggaggtggtggtggttaTTCTGTTGGAAGTTTTGGTGGTGGTGTATTTACAGGAGGAGGATTGGCTCCTGTGGCTCCTAGGTCAGAAAGTAGGGATGACAGTTACCGCTACTATGCACCATATGGTCCACCATTTCCTGCTGCCCCTGCCCAACCTGCGCAACCTCCATTCTCAGATGGTTTGGACCGCCggtacacacacagcttgtaCAATGATGAAACAGCAGGTCTTCCTGATACAAGTAATGCTGCAGAATCAGTTTCAACTGGTGTAGGCCAACCTGCCCTGCAAAGCCCCCAATATGAGCAGTTTCCACCATTTGGAAGACCACAGCCTCTGCCTCCATTCGTTCAGCAACCTGCACGTAACCCTCTCAACTCCAACTTCGCAGAGAACCCTGCCAGCAATGTAGGAAGTGTCTACCGACCTCAGCAAAGAGGGCTGCCTGACCTGGTGCCTGACCCTAACTACATCCAGGCCTCCACATACATCCAAAGATCCCACATGTACTCCCTTCGCTGTGCCGCTGAAGAAAAGTGCCTCTCTAGTACAGCCTACAGCTCTGACATCACAGACTATGATGTCAGGGTCCTGCTACGCTTCCCTCAGCGGGTTAAGAACCAGGGAACTGCTGATTTCATGCCCAACCGACCGCGGCATACCTGGGAGTGGCACAGCTGTCACCAACATTACCACAGCATGGACGAATTCAGTCACTATGACCTACTGGAGGTGAGCACAGGAAGGAAAGTAGCAGAAGGACACAAGGCCAGTTTCTGTCTGGAGGACACCACATGTGACTTCGGCCATCTTAAACGCTATGCCTGCACTTCCCATACCCAGGGTCTCAGTCCAGGTTGCTATGACACATACAATGCAGATATTGACTGCCAGTGGATTGATATTACAGATATCAAGCCAGGAAACTACATACTGAAGGTTCAGGTGAACCCCAAATACTTTGTGCTTGAGTCGGACTTCACCAACAACATTGTCAGGTGTAACATCCACTACACAGGGCGCCTTGTCCGAGCAACGAACTGCAAGATCTCCCAGTCCTGATTACCAGACTCATCAAAAGATGATATCCTGGGAATGAAGCTGTTCCATTGAAATGTGAATGGAATActagttgttgtttttgctcATGTTGTTGTTTATGTGTTGTTCTGGTCTCATAAGTTGATTGTAACATGAAGGTCAGTGTGTACTACTTATATACTCAAGATACATACTGACACACCAATTACACCACACAGTGGGGTACCAAAATGGGGCTATTTTATATTTACCATATTACCAACATACCCTTTTCAATGTATTAAACTCACACCAGAACACACAGTCATCCTTAAAGCCAGATAGACACTGTATGATTTGAGTTATTCAGAATCGGGCCAAATTTCAGCCATATTAGAGTCAAAATCTCTGCAAAACAGACAAACCATAGGATGCACATTCCTGCAACCTCACAATAAATCATAGGATCTCTTGATACACAATGTGTTAACAAAGAACATATAAACTTGTACAATGTTTGCCTGGCTTTAGATGTAAGAATAGCTTTTAGTCCATTAGAAACACTGGCTTATTTGCACCATTCATTTCTAAGAATGGTTATATTTAGCAAAACCATTTGAttagattaaaaacattagATCAAATAGAGACAGGTGCTGAAATGCAAACAACTGAGCCCCAAAAGGGCACGAGTAAACTGTAAATCACCACTTCAGATCAGGAAAAGTCCCTGAAACCCTCATTTTCAGTGTCAGGAGAAGAGGATATATAGACCCGTACAACTGGAAGCAATCATGCTCttgaaaagtcttttttttctccctctccacTGAAATGAAggtgaaataatgaaatgtggTTGAAAGGGACATCAGAGAATTTTGCGTGCATGAATCATCTACTATCATAGCCAGTTTGTTCAGGAAATTCACTTTAGTTTGACTGAGGGAGCCTTGAACAGATTCTCGTTCTGAACATGCCGGAGGGGATTAGACAATTTTGAATGAAAGCCTTATATCCAAGTGCTGGCTAAAAGGTTTATATTCCCCCGTTAACTGTTTCCTTTTGAAATTGGCTTTCTTGTTATCGTGATGGTTTACAGATAATGTGTAATTTAGCAATCGAGTAGTCACCTCTTACAAGAAAACACGTGGGTGACGAATGACAAACGTTTGCGTGCATCTGATAAATTGGCAGCTTTTTTGCTCAGTGATTCTTGTAGATCAAAAGTTTTTTGTGTCTGTTACCTTTTAAGATAGACTTGTATCATGTGAGCAGTTGTGGGTTGTATACGTATATTGTTTTCGAAAGCTACCAACACTGGTCCGATGCCATAGGTCATCATAATCTTTACATGTGACTGTTACTCCACTATTAAAAGGCGTTAGCTCGAAAAGATTATTttaactgcattattttttctctgattatttttttttcttaaaagaaagTCTCAAGTACTGTTTTAGAACATTAATTGCTGTAATTGTTAAATTGTAGGCATTTCTTCTTCCTTGATTATCACATCTGATTCCTACCTTCATGTAATAGCTGTGCTGCAGCAGAATGTAACTAAGATGATACTACTGTTGCAAAGCTAACATCGCAAAGCTTGATATTGCTTACAAGCTCAATGCCATCTCAACCTACCTCTGAGATAGAgttagctattttttttccagttaaagATCTGCAGTAGAGAGAATTTACCTTTATTGCTACACTTGAAGGAACTCTAATTGTATTTACAAGACACACTAAATGCATCGCAACTCAATATATGATGTGTAATCATTCATAAATGCTTATTTGGAACTACATCCCATGTGACATGTTTTCTTATAGGtattgtacattattattaaatgccTTCTGAATGTGTTAAACAAAGTAACACAACTTCTCTATGTAGCTATATTACCGATGGATGAAAATGATCAGAAGTAGGGGATGGGGTGGGGGTATGTGCAACTAAACCCAGGGCAGATCTTGTGCATTACATTAATTTTCAtcatataaacaaatgaattctTGTATTTCATTCCTGCATTTCTTCTAACTGGTAACAAGGATTGATCTTTCTTCAGTTTCTTACCAAATTTAGAAGACAGTGTGGAGATTTGCACATTTCTTTACTCAAGTTTGTtggttgttttctttgcttctgAACATTTGTTTTAAGACTGTATACTGGATCTTCAAATAAAGATGAAAGAGTAATACAACCA

Function

symbol description
loxl1 Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in hypochord and notochord. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; exfoliation syndrome; and primary open angle glaucoma. Orthologous to human LOXL1 (lysyl oxidase like 1).

NR:

description
PREDICTED: lysyl oxidase homolog 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0030903 notochord development biological_process
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG:

id description
K14678 LOXL1; lysyl oxidase-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913764.2 True 4325 mRNA 0.42 7 25890299 25905340

Neighbor

gene id symbol gene type direction distance location
LOC113526366 LOC108264060,LOC108430275 coding downstream 20028 25839470 ~ 25870271 (-)
LOC113526369 LOC108264860 coding downstream 543335 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 570606 25304736 ~ 25319693 (-)
LOC117597607 NA coding downstream 588886 25295458 ~ 25301413 (-)
rasgrp4 LOC108264291,LOC108428524 coding downstream 708192 25155182 ~ 25182107 (-)
cd276 cd276 coding upstream 288710 26194050 ~ 26292607 (-)
zgc:158464 LOC108264397 coding upstream 419041 26324381 ~ 26464945 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 610181 26515521 ~ 26532135 (-)
rec114 rec114 coding upstream 761927 26667267 ~ 26691735 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding upstream 921684 26827024 ~ 26847963 (-)
G105092 NA non-coding downstream 54261 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 645055 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 648529 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 675509 25192057 ~ 25214790 (-)
G104694 hnrnpul1 non-coding downstream 739143 25113977 ~ 25151156 (-)
G105219 NA non-coding upstream 182140 26087480 ~ 26087695 (-)
G105379 NA non-coding upstream 414692 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 838363 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 840779 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 882600 26787940 ~ 26788856 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 341371 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 810787 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1126138 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1178931 24623516 ~ 24711368 (-)
G105376 NA other upstream 333990 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 663745 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1239548 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3715459 29620799 ~ 29714001 (-)
G107525 NA other upstream 4438191 30343531 ~ 30344876 (-)

Expression


Co-expression Network