aamdc (aamdc,LOC107658908,LOC107660681,LOC107600309)


Basic Information

Item Value
gene id aamdc
gene name aamdc,LOC107658908,LOC107660681,LOC107600309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23297355 ~ 23299010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914029.2
TGCTGGTCATGACGTAGGCGAGTGGGCGTGTTAGTAGTCACggccatatttattattatagttggGCAGTCCAACAAGGGTAAAGTTACATATCCAACGCGACAGGTTGATTCTAGCAAGAAGGCTGAACCGCCATATACTGGGTTACAGGAGAGAGCAGTCATGTCATCTCCAGAAATTGCGTCTCTGTCCTGGGGCCACATAAAGGTCAAAGGTTGTGCCTCTTCCTACAAAGACTGCAAGGTGTGGCCAGGTGGCAGTCGGGAATGGGACTGGAGAGAGACTGGGACAGATCATTATCCAGGTGTCCAGCCAGCCGACCTGGAGGAAATCCTGAGGAAAGGAGTTCAGACGCTGGTCATAGGAAGAGGAATGAGTGAAGCATTACAGGTGCCTCCCTCCACAGTGGAACATGTGAAGAAACAGGGTGTGGATGTGAAGGTACTACAGACTGAGAAGGCTGTGAGAGAGTACAACATCCTTGCAGGACAGGGGGCTAAAGTGGGAGGAGTTTTCCATTCCACTTGCTGAAGATGCCGAGCCAACTGTACGGTGCCTTACATCTCAGCTGTTAAAAAAACGTTCAAAATCTAAAGCATTGCACTAACCTTTGTTATCTGGTTGCCATGAAAATGTTGTTAAAATATTCTTCAGTTCTTTACAAATTACAGAATTTacaacaaacaaaagacaaactttTATTACA
>XM_026914031.2
AGGCGATAAAGTTCCACCTGATTGGATGCTGGTCATGACGTAGGCGAGTGGGCGTGTTAGTAGTCACggccatatttattattatagttggGCAGTCCAACAAGGGTAAAGTTACATATCCAACGCGACAGGTTGATTCTAGCAAGAAGGCTGAACCGCCATATACTGGGGAGAGAGCAGTCATGTCATCTCCAGAAATTGCGTCTCTGTCCTGGGGCCACATAAAGGTCAAAGGTTGTGCCTCTTCCTACAAAGACTGCAAGGTGTGGCCAGGTGGCAGTCGGGAATGGGACTGGAGAGAGACTGGGACAGATCATTATCCAGGTGTCCAGCCAGCCGACCTGGAGGAAATCCTGAGGAAAGGAGTTCAGACGCTGGTCATAGGAAGAGGAATGAGTGAAGCATTACAGGTGCCTCCCTCCACAGTGGAACATGTGAAGAAACAGGGTGTGGATGTGAAGGTACTACAGACTGAGAAGGCTGTGAGAGAGTACAACATCCTTGCAGGACAGGGGGCTAAAGTGGGAGGAGTTTTCCATTCCACTTGCTGAAGATGCCGAGCCAACTGTACGGTGCCTTACATCTCAGCTGTTAAAAAAACGTTCAAAATCTAAAGCATTGCACTAACCTTTGTTATCTGGTTGCCATGAAAATGTTGTTAAAATATTCTTCAGTTCTTTACAAATTACAGAATTTacaacaaacaaaagacaaactttTATTACATGGAAAAAC

Function

symbol description
aamdc Predicted to be involved in positive regulation of fat cell differentiation. Predicted to be active in cytoplasm. Orthologous to human AAMDC (adipogenesis associated Mth938 domain containing).

NR:

description
mth938 domain-containing protein

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914029.2 False 706 mRNA 0.46 4 23297364 23298984
XM_026914031.2 True 735 mRNA 0.46 4 23297355 23299010

Neighbor

gene id symbol gene type direction distance location
LOC113526825 LOC108263933 coding downstream 135046 23158732 ~ 23162309 (-)
LOC113526884 NA coding downstream 143706 23150108 ~ 23153649 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 955914 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1633028 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1662798 21623853 ~ 21634557 (-)
aqp11 aqp11 coding upstream 35167 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 156683 23455693 ~ 23504297 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding upstream 214383 23513393 ~ 23535680 (-)
dcun1d5 dcun1d5,LOC107712802 coding upstream 248382 23547392 ~ 23557534 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding upstream 260113 23559123 ~ 23571022 (-)
G103702 rps3,LOC107600794 non-coding downstream 22073 23270144 ~ 23275282 (-)
G103600 NA non-coding downstream 34272 23262807 ~ 23263083 (-)
G103576 NA non-coding downstream 38167 23219022 ~ 23259188 (-)
G103436 NA non-coding downstream 361309 22928169 ~ 22936046 (-)
G103410 NA non-coding downstream 414202 22865924 ~ 22883153 (-)
G103719 NA non-coding upstream 22653 23321663 ~ 23323412 (-)
G103727 NA non-coding upstream 30666 23329676 ~ 23330101 (-)
G103817 NA non-coding upstream 213147 23512157 ~ 23513328 (-)
G103820 NA non-coding upstream 273579 23572589 ~ 23575679 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 1115890 24414900 ~ 24464578 (-)
si LOC108264758,LOC108431149 other downstream 990586 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2284255 20995341 ~ 21013100 (-)
G102566 NA other downstream 2330445 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2880781 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3317096 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 291935 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 349674 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 433860 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1181292 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1324506 24623516 ~ 24711368 (-)

Expression


Co-expression Network