LOC113526825 (LOC108263933)


Basic Information

Item Value
gene id LOC113526825
gene name LOC108263933
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23158732 ~ 23162309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914213.2
CGCCTTCACAAGAGCAAGGGAATGAGAGGTTCAACCTGAGGAAttgtgagaaaagagaaagaaaccacGATAGGATTATTTCTCCTGGATTGATCATTACACCAactTCCACGAATCAAGATGGCTGCcttaaacatttccagtttcaTCAACAGCAGTTCTCAATACCACTGCAAGTTTAATGAGGACTTCAAGTACATCTTACTTCCTGTCAGCTATGGGGTGGTGTTTATTGTTGGGCTGGTGCTCAACGTCATTGCATTGTATTCCATCTTGTTCCGGATCAAACACTGGAGCCCCAACACCATCTACATGCTCAACCTGAATGTGTGTGACACACTCTATATCCTCACACTACCCTTTCTGATCTACTACTACGCTGACAAGAATGACTGGCCTTTCACTGAACCTTTCTGCAAACTTATACGCTTTCTTTTCTATACCAATCTCTATGGTAGTATCCTTTTTCTCAGCTGCATCAGCATCCATCGCTTCCTTGGCATTTGCCACCCGGTGCAATCAATGCAGTGGGTTAATGCCCGACGTGCCCGTTATGTCTCAGTCCTTGTTTGGGTAATTGTTCTCATCTTTCAGGCACCGGTGCTCTACTTTTCCCGAACCACCAATCAAGTCTGCCATGACACCACATCTCAGGACCTCTTTAATTACTTTATGGTCTATAGCTCGGCCATTTCGGTCATTTTGTTTGTAATACCCTTTGCATTAGTGCTAGTTTGCAATGGTCTGATGGTGCGAAAACTTCTAGAGCCCACCACCATAGGAGGTGCCACGTCCCAGCGCTCCAAGCAAAAGTCAGTGAAGATGATTGTCATAGTGCTGCTGGTCTTCATACTCTGCTTTCTGCCCTTCCACCTCACACGGAGCCTGTATTACAGTTTTCGATACGTAAAAGTGAACTGTACACTGTTGGAAGGTTCTAACATAGCTTACAAGGTCACAAGGCCACTAGCCAGTGCAAACAGCTGTATTGACCCCATCCTCTACTTCATGGCAGGCCAGGGTTTCCGACAGAGCCTAAACAAGAAACACAGACAATCtcagagaaaggaggagagcAAGTGCCTCTCCACCTCTTTATGAACAAATAATTTGAAATATGAAtctgaaacacaaacaagtgCAATGGATTAAAGAAAGTTATGAAGTGCATAGGAATGCTTTCATGACTGCTGAGCTAAATGGGTGCTTACTAAACTTGGGTGTACTGAACGCAgacatgctttttaaatatctcGTCACAAGGGGGAACAGGAGACAAACACTTATCTAAAGCAACTCATCTATAGCTCTTTGAGAATACAGGGACACGAGAtacaatgaaaataatttaaaatatggcTTTATTTCTAATAATTCCCTGctttagatttttctttttcttattaagATAATGAGAAGTAAGATTTTAGGAAATGTTTGGTAAGCCATGAGTCTCcatctttatattatttaccAGCAATAGGTAGTTAAACTAATTTATGCTAAATCCATGTAAGACTTCTATACGTATGTAGAGAAGCCAAGAAGGTCAAGCAAGCTCAGGGACATGATAAACATAGAAGGAAAATAGATGGAATAtaatattttagatttagatttaatggCTGTAATGGTAAATCTGTTGTTTAGCGCTAGATACCGAAAGAGTCACTGTGTTGAGCACTTGATCAGGGCTCTTAACCCTCATGCATTCTGTTCTTggactgtatattttacatttgtaaaatgCATTGGATAAAGGAAatcttaaatatgtaaatattgaaatgtattaaaaaggTAAAGCTTAAACAGAAAGCTTTGGATATCCTGAGCTTGTCTGGAGACAAGACTGGAAACAATCAGGAAACCCTTTTTggtgagagattttttttaatattcatttttcttttcatagaGTGTGCATCCATATTGGGGGTTATTAAGTGTTTAAGGGATATGGAAGTGTTTAAGGGATATTGAAAATCTTTTTGAccattattacaaaataatatagGCCTAAAGTGTTCTTTATAACTCAAAAGGCAAGGTTTTATTGCATGTAGTTGAGGATTGCTGACAAGAAAACCTGATTAAGATGATTGCACACAACTTTACTATGATAAACCTGTTACTTTCATTTTTCTGGTCATTTTCCCGATTGTCCATTAATGTATTCAgctgtcaaattaataaaattgtgttGACATTGTGGTTAATTCATGTTCTCAAAATGTAAAGTGCCCATGGAGCACTATGGCAGCATTGtgcctaataaataaatacatttcatcata

Function

NR:

description
PREDICTED: P2Y purinoceptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914213.2 True 2297 mRNA 0.39 2 23158732 23162309

Neighbor

gene id symbol gene type direction distance location
LOC113526884 NA coding downstream 5083 23150108 ~ 23153649 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 817291 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1494405 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1524175 21623853 ~ 21634557 (-)
ppfia1 ppfia1 coding downstream 1583886 21495122 ~ 21574846 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 135046 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 171868 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 293384 23455693 ~ 23504297 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding upstream 351084 23513393 ~ 23535680 (-)
dcun1d5 dcun1d5,LOC107712802 coding upstream 385083 23547392 ~ 23557534 (-)
G103436 NA non-coding downstream 222686 22928169 ~ 22936046 (-)
G103410 NA non-coding downstream 275579 22865924 ~ 22883153 (-)
G103235 NA non-coding downstream 822029 22335946 ~ 22336703 (-)
G103161 NA non-coding downstream 930016 22228385 ~ 22228716 (-)
G103159 NA non-coding downstream 930869 22227628 ~ 22227863 (-)
G103576 NA non-coding upstream 56713 23219022 ~ 23259188 (-)
G103600 NA non-coding upstream 100498 23262807 ~ 23263083 (-)
G103702 rps3,LOC107600794 non-coding upstream 107835 23270144 ~ 23275282 (-)
G103719 NA non-coding upstream 159354 23321663 ~ 23323412 (-)
G103727 NA non-coding upstream 167367 23329676 ~ 23330101 (-)
si LOC108264758,LOC108431149 other downstream 851963 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2145632 20995341 ~ 21013100 (-)
G102566 NA other downstream 2191822 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2742158 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3178473 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 428636 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 486375 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 570561 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1317993 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1461207 24623516 ~ 24711368 (-)

Expression


Co-expression Network