LOC113526880


Basic Information

Item Value
gene id LOC113526880
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1082696 ~ 1085313 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914301.2
TGGCGCTGCTGAACAGATGCTAGATAAAACCACTCAGGTTGCGAGTGATATCCTGGAGAAGTGGTTATCTTCACACATTTCCACAGATTTATTCAGTGGGAAAGATTCGAGTTCCAGCACAGCGTCGTCACAGACGGCGTCAGTAGATCTGGCTCGAGTCAGTGCTGAAATCCTAAACAGAGTGATCAGTGAAATAGCTGATGATATGAAAAACAGACCGGAAGCTCAGGCGAGTGATGCTGATGCTCACTCAGTTCACAAATCAAAGAACTTCTCAGACATTTTGCCGAAGCTACAAAGGCTTTTTGGactcaaagataaaaagacacgGTCGTGCTCGAGCCTGCAGGACGCAACAGTAACTGATGCTCAGAGCCTCGTGTCCGTCAGCAAAGCTCCCAACCTGCAGGCTGATATTGACAGCTGCACTGAGGAGCTCATGGAGAAGAccacagttttatttgtgtgtgacGAGCTGCTGGCCAAGTCCAGCTCTTCGGAATCCTTGCAGTCTTGTACTTCGGATCATCAGACCTGTGAGGTGAGCACTTCTGTCCCTCTGAGGTCTAATGAGTTCCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGGAGGTTATCAACAGCAAATTCCTCGAGATGCTCATTAGAAGACGTGCAGAGTGCCATCAGTACCGCAGAGTCACTCGTCTGCGTTTTAAACGACTTTAATCAGTCCGTGAAAGATGAGATTAAGAGCTCTGATGAGCTCGATGCCTTTTCTTGCTTGTTGGACGTCAGAGAAGCAGAATCTGCCAAAAATCCACAGAACATCTTGGGAAAAGTGCAAAGTCTCCTTCAGGCATTCTTCTCAAAGGCATCTAGAGCTCTGAGCTTTCCCTCACATGACGACAGGGTGGAGGAGCAGGTGGACCTGGACCTGTGCACCAGCAGGGTCATTACCGAAGTCATCGATTTGTTAAGGAGTGAGCTGACAGCTCCACCTAGAGTGAAGAACGATGACGCCTATTTCCACTCCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGCCACACGGAAGCACGTCTCAGGAAGGTGGTGTCCGCGTTAAATCTGCAGGTCGTTTCTACAGCTTCTGAGATTTCCCAAACTGTTAGCTCCACTGTGCTGCAGTTTATAGACGCAGACAGGAAGTCGAGGTCTTCAGTCCAGAGGAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGACGATGAAAGGACAGACGCGTCAGCACAGTCAGAGAGGGATGAGGATCGTGTCACTCCCATCTACATCAGCGAGGATGGCACGGTCCATGAGCTCACAGAGCTGGAGGATCTTTCTCCAGAGGAGATGATACAACAACAAGCACATGAGTGCATTTACACGTTTGCAGAGGAGTCCATCAAGGCTTTACTGCAGAATGTGCAAAACGCAAGACCAAGTGCAGGAACCAAAGCACAGGAAAGCAGCTTGGTGGACAAATCAACAAGTTGTCCTTCTGCTACAGTGCTCGCATGGGAAATCGAGGACGCTGGGACTTCTTCTGTGTATCGTATTAACAGTTTGCATCCTAAGTCTCCTCAGCTATCAGCAGCTTCCTCCAGCTCGTCTTCTCGTGCTGACGTGGAGGAGATTCAGGAACATCTGAGCGTCACCGATCAGCAGAGTCGAAGCGGAAGTGATGGACGCTCCTCACATCCAGCAGATGAGGATCAGGAGAAGAAGAGACTCGGATGTCACGGGCGCGTGATCAGACGTGGAGTTAAGAAGTCGAAGAAGAAGCGGAGCAGAGTTCCTCTGACAGGCGATGATCAGCCGACCCCTTCCACCTCCGCAAATCTTCACAGCTCTTCACACAGAGAATCAAAGGCCTCGGGGTCGGTCTTCAAGAACGCTCGCAGAAGACTGGCCAAGATCTTCTCCAACATCTCCAAGTCCTTCACCGGCTGCTTCAACTCTGAAACCGCTCCATAAATTCTTCAGCATAAAAATaatcaagcaaacaaaaaaacaaaaaaactaaactaactgacaaacaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914301.2 True 2154 mRNA 0.49 3 1082696 1085313

Neighbor

gene id symbol gene type direction distance location
homer2 homer2,LOC108414443 coding downstream 7793 1056705 ~ 1074903 (-)
LOC117597537 fsd2 coding downstream 26429 1034949 ~ 1056267 (-)
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 382919 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 422142 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 835386 238677 ~ 247310 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 18638 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 40318 1125631 ~ 1149797 (-)
spata5l1 spata5l1 coding upstream 142294 1227607 ~ 1234626 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding upstream 208739 1294052 ~ 1314655 (-)
dut dut,LOC102779749 coding upstream 377430 1462743 ~ 1469671 (-)
G92359 NA non-coding downstream 66514 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 98175 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 106147 931958 ~ 976549 (-)
G92338 NA non-coding downstream 119486 962489 ~ 963210 (-)
G92321 NA non-coding downstream 167768 911310 ~ 914928 (-)
G92294 NA non-coding upstream 64226 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 203388 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 251578 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 259237 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 265893 1351206 ~ 1354977 (-)
G92340 NA other downstream 93640 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 235761 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 280484 782910 ~ 802212 (-)
G92240 NA other downstream 335166 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 758756 266207 ~ 323940 (-)
bloc1s6 bloc1s6 other upstream 111822 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 137408 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 430425 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 526498 1611811 ~ 1648286 (-)
G92531 NA other upstream 683092 1768405 ~ 1768795 (-)

Expression


Co-expression Network