LOC113526884


Basic Information

Item Value
gene id LOC113526884
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23150108 ~ 23153649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914311.2
GAGTGATAAAAGTATGCAGAacagagattgagagagagagatagagagagagaagagagagaggggaggaaagacagacaaagagaaataTAAAGTTGTTTTCTAGTGGATTAATTCATACTTTCATGAATCAAGATGGCCACTCCAAATGTATCCAGTTTCATCAACAGCAGTGCTCAGACCAAATGCAACTTCACCAAGGATTTCAACCTCCTGCTTCCAGTTACCTACAGCCTGGTGCTGGTGGTCGGCCTGCTGCTCAACCTCACCGCCTTGTATGCCATCTTGTTCCGGATCAAAAACTGGAGCCCCAACACCATCTACATGATCAACCTGATTGTGTGTGACACACTCTACATCCTCACACTACCCTTTCTGATCTATTATTACTCAGTAGAGAAGAACTGGCCATTCACTGAAGCGTTCTGCAAACTTATACGCTTTCTCTTCTATACTAATCTCTATGGTAGCATCCTCTTCCTCAGCTGCATCAATGTCCATCGCTTCATAGTCATTTGCCACCCGGTGCGATCAATGGGCTGGATTAATGCCCGACGTGCCCGTTATGTCTCGGTCCTTGTTTGGGTAATTGTTCTCATCTTCCAGGCACCGGTGCTCTACTTTGCCCGAAGTAAGAATGGTACTACCTGCACAGACACCACAACGGACGAGCTCTTTGAGTACTTCCTGTCCTATAGCTCATTCATTTCGGTCATTTTCTTTCTAATACCCTTTGTTTTAGTGATGTTATGCAACAGCCTGATGGTGCATAAACTCATACAACCCAGCACAGTAAGAGGTGCAATATCTCAGCGCTCCAGGCAAAAGTCTGTAAGGATGATTGTCATCGTGCTGCTGGTCTTCATAGTCTGCTTTGTGCCTTTCCACCTGACACGGAGTCTTCACTACTTTTTCCGCCACTTAAAAGTAAATTGCAAACTCTTGGAGGGATCTAGAATAGCCTACAAGATCTCAAGGCCCCTAGTAACTATTAACAGCTGCATTGACCCCATCCTCTACTTCATGGCTGGCCAGGGTTTCCGACGCAGTCTAcctaagaagaagaagcaaggCCAGAGAGCTGAGGAGGATAAAGGTTTATCATCCTCTCAAACAGATTAAACAattagaatatgaatatgaaggACAATCAGGAGTTTCTATGAGGAATTAATAGACCAAACAATAAAGTGAAAtgggggaaataaataaattgggaAATAGAATGTAATGTAGAGCTTTGTTGGATCTGTGCTACTGACCAAATGCTTCGACTTTAAAACTCAGTGCCAGAGATCCACTGTGCTTGGACTGAATTCTTTCACATTTGTAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914311.2 True 1336 mRNA 0.44 2 23150108 23153649

Neighbor

gene id symbol gene type direction distance location
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 808667 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1485781 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1515551 21623853 ~ 21634557 (-)
ppfia1 ppfia1 coding downstream 1575262 21495122 ~ 21574846 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 1657627 21467974 ~ 21492481 (-)
LOC113526825 LOC108263933 coding upstream 5083 23158732 ~ 23162309 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 143706 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 180528 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 302044 23455693 ~ 23504297 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding upstream 359744 23513393 ~ 23535680 (-)
G103436 NA non-coding downstream 214062 22928169 ~ 22936046 (-)
G103410 NA non-coding downstream 266955 22865924 ~ 22883153 (-)
G103235 NA non-coding downstream 813405 22335946 ~ 22336703 (-)
G103161 NA non-coding downstream 921392 22228385 ~ 22228716 (-)
G103159 NA non-coding downstream 922245 22227628 ~ 22227863 (-)
G103576 NA non-coding upstream 65373 23219022 ~ 23259188 (-)
G103600 NA non-coding upstream 109158 23262807 ~ 23263083 (-)
G103702 rps3,LOC107600794 non-coding upstream 116495 23270144 ~ 23275282 (-)
G103719 NA non-coding upstream 168014 23321663 ~ 23323412 (-)
G103727 NA non-coding upstream 176027 23329676 ~ 23330101 (-)
si LOC108264758,LOC108431149 other downstream 843339 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2137008 20995341 ~ 21013100 (-)
G102566 NA other downstream 2183198 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2733534 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3169849 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 437296 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 495035 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 579221 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1326653 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1469867 24623516 ~ 24711368 (-)

Expression


Co-expression Network