znf296 (LOC108264426)


Basic Information

Item Value
gene id znf296
gene name LOC108264426
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24739091 ~ 24750597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914354.2
GAACACTGACGGGCAGAAGGCTGCGACCGTGACCACAGCCGGCGGAGATAACTCCAGAAGCCGACTGTGTagtttgggtttgtttgtttgtttgttttctgtatttgttttaagaCACCGTTTAAACCGGTAGTGTTCAGTCATTCAGGACTTCGTATAGGTATTTAAGAGCGACTAAAAGCCGGGGAGTGTGCACAAAACGCTGATAATGTCCAGGCGCAAACTTGGAAGCCGACCGCAACACCTGAGCGTGATTCAAGATGCCCCAGAGCTCAGCGTGACTTCGAGCTCACCCTGCTCTCCTGATCACATAGCTGGAGGCAGCGATCTACTGACATGCGGTCAGTGTGGTCAGGCCTTCCCTCTGGCTCACATCCTCACCTTCATCCAGCACAAGCAGGGAGGATGTAGCAGCACCAGGGCTGGCCCACTGGACCACACGCCTCAGTCTCCAGCCAATCATGCGTTCCGACGTGGCCCAGGCGTGCAGCTGGAAACAGGCTACGTGGAGTTGAAGCGGACGACAGGCAGGCGTTGGGAGGAAGAGCCAGGTGTGAAGGCGGAGCCTAGCCGAGCAGATGAGCCATCCAGTTTTACCTGCCtcgtatgtgagtgtgtgttgcctAGTGCGTGGGCTCTCCTCCAACAcgcccaacacacacactccctgagTCTCTACCAAGTCAAGGCCAATCACCCACAAAAGCCCAAACCAGCGGCCATGATGGATCCGCGCCACCTAGGCGCCACACTGGCTTCTGCCTTCCACACTTCTTCTGCCTTGAAACGTTTGCCGCGTTCCCATCAGCCCCAGAGCCATGCCCCTATGTCAGGAGGACGGAATATTCAGAGCCTGAACTTCTCAATGTGTCTGCAGCGGCTGGCTGAGGTGAGTGTTGGAAATGGAGGAGTCGTGCCCTCgccatctccatctccacccGCTGCTTCTCCTTTTCCTCACTCTAACCCTCCATTGCTAGGCGCCTTCTCCTGTGAGGTCTGTGGCCAGAATTTCCAGTCCTTGCGCAGCCTCTCTGCTCATCGGCGCACACATGCCACTGAGAAGCCTTACCATTGTGCTGTGTGCCAGCTCTCCTTTGCCCAAAGTGGAGAGCTAGCTCGACACATGAGGAGCCACCGAAAGGTTCCAGAAAGCTCATTAAAATTGTCAGAATGCTCATTAAGATTGCCAAATTTTGCTGTTGCCACCACAAACGAGGATGGGAAAGTCCCAAGCAGGTTTTCTCAGCAGGGATATGGGGATGGGGGGCATCAGGAAGGTGACCCTGCAGGTACAGGTTTGGTCCTGTTGGCATCCCAGCCGGGAGGAGCCAACCGCAGTTTGCAAAGGTACTATCAACTTCAGGCGGACGTAGACGAGGAGGTGCAGGTGGAGCCGCAGCATCCTTCACCCTATGGCAGCCCTTCAGAGGGCTCGCTGGACAGCGGAGAGACTGGTGAGAGTGGCATCGCCAGCGGCAACTGTACTCCCAAGAGGCCTGAGCGAGACAACGAGAGAGAGGGCGAGGTGGAGGCAGAGGTGGAAGGCGTGGATGTGGTGCAGGATTGGCAGCAGGACAACGAGAGACGCCAGTCTGCTGGTCgcaagaagaaagaagaggcATGTGAATTTTGCGGCAAACGATTCCGCAACAGTAGCAACTTGACTGTGCATCGGAGGAGCCACACAGGGGAACGGCCATACCGTTGCGGTTTGTGCAGTTATGCCTGTGCCCAGAGCAGTAAGTTGACACGCCACATGAAGACCCATGGCGCCCGTGGCACCCGTGCCCCCTTCCAGTGCCAGCTCTGCTCTGTGCCCTTTACTGTCTATGCCACACTGGAGAAGCACCTGAAGAAGACACATGGTATTAGCCATGCCACAGTTGGAGCCTACagccagaacacacactctctaagcCCTCCTCTTGGATACACCAACCTTGCCATTAAAATGGAGGATGATCCTACCATCGAGCACACCGAAGCCCCAGTCCAAACAGTCACAGAGGTTGTGGAGACATCCAAAACTCTCAAAGAAGAGGAATCTGAGATGATGGTCACAACTGATGGTGCTCCCTCACCCACTCCTGAAGATGCCAGCCATAAAGTAGAGTTGAGTCTTCCTCCAAGCACTGCCTGAACATCGAGGAATCATTCAGGGATCATACTGACCACAGCCAGCACACTAGATGCTTGGATCTGATTCTACCCATCCCCTGGTCAATATCACCCTCAATAACTGAGGCACCAAAACCATGTTTTGATGAATAGGAGCCACGTTCTGGGGTTGATCAGCTATCCTAGATCAGATTACAATCAAGTGCCTACATGTAGACAACTGTGACCATTCCTGCAAGGAGTCGGGACTCGGtatgatatttaaaatgttttgcactCATTACGGTGAGTGATTTGACTTGTGATAGTCCAGTCTGTCCAGGATTATAGAGACAGCGTGATGCCTTTCAGCCCCAGAAGAAGACAGGTGAATCAGCTTAGAGCATCAATGGCCAAGAAAGATCAAGATTGTCTGTACATGATTCTTAGTAGTTTTTGTTTTAAGATTCTTAGAGGTTGGTTATTTGTAACGAGCTCTGTTTGTTACAAGAAATTACACACTCAATTTTAGTGACTCTTAAAGTCAAATTGACATGGAAAGTGAGATTTTTGTAATGCTCTCTTTCCCCAACATTTTTGAGAGAATTATACTGGcaatggggattttttttttttttttgctggtttcAACTGAAAATCCTTTTAAACTTAGAAACATTCTTAATCTGTGTCCTGAACACTGGACCTTAATTTTGGGATACTGTTAATAATCAGCACAGTTTGGGTATGTGGCAATGAGCATCAACAATCATAACACAGATTTCTGTGTTCCTAATCTCAAACATGTATGGCAATGTCTTAGGGATCTTTGTAAATGTATCTGAAGTCATCGCTTACACATTCTGTTCATTGTAACCGATTCATCTCAAAACCTCTAGCTGCTCTTCTATGCATAAAgcttaattttataattaaaaagaaacgGGTGTCTGTATGCTTTCTGTTTTGTCTGTATTGCTGTTTACAGATTAATGTTCTGTTTACAGGTTATGTTTGTTTAACTGCATGCCATGAAACTTTAAGCTGTCTTTTGCTCTGTGTCTTTTCGTGGGTGCTGCATGTTGTGTGAGTGCGCAAATGAAAAGCCTTGCTTCAGAGGAATGACTGGGTGGGGAACAGCACTGACCTGTTGCCTGGAGAACCTGCTGTGTgagcacttgtgtgtgtgtgtgtgtgtaaatatacataTGGGTTAAAACGTGTCTTATTGTATGTATGCAGAAgatgtttattagtttattttctaTGATTATTGATGTCTGTAATCTATCAGGGAACTGTTTGACTGTTTtcttttaagtaaaaaatacaGTTCTGACTATTTGAATATAGACAAATGTGAAAGGCCGTTGGGCACAACAGTGTCCACCACTTCAGGGAATGACACGCTGTACATAGAGAGCTTCACCCTCCCTAATAATGATGATCCAATTTGTTGTTTGCTTCATCTGTATTGATTTCAGTTATATCtgttatgtatgtataatattttcCCCCAGCATTCCATGGGAAGTACTTTTGCTGTAAAGCAGCCATAATTTTGTTATTCTGTGCCTGTGCAGGTGAATATTAAAAGACTGATGCAAAGTCAAaa

Function

NR:

description
B-cell lymphoma/leukemia 11B-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914354.2 True 3715 mRNA 0.48 3 24739091 24750597

Neighbor

gene id symbol gene type direction distance location
capn12 LOC108264620,LOC108433431 coding downstream 12069 24705004 ~ 24727022 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding downstream 52841 24680767 ~ 24686250 (-)
c6h19orf47 c4h19orf47 coding downstream 64235 24667061 ~ 24674856 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding downstream 261119 24469967 ~ 24477972 (-)
tbcb tbcb,LOC107687357,LOC107662130,LOC107560142 coding downstream 297477 24436290 ~ 24441614 (-)
siae siae coding upstream 16978 24767575 ~ 24776782 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding upstream 274220 25024817 ~ 25034882 (-)
ppp1r13l ppp1r13l coding upstream 355832 25106429 ~ 25135256 (-)
rasgrp4 LOC108264291,LOC108428524 coding upstream 404585 25155182 ~ 25182107 (-)
LOC117597607 NA coding upstream 544861 25295458 ~ 25301413 (-)
G104320 NA non-coding downstream 204672 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 274513 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 1163412 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1225763 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1408990 23329676 ~ 23330101 (-)
G104694 hnrnpul1 non-coding upstream 363380 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 441460 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 488513 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 492875 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 1082682 25833279 ~ 25836038 (-)
G104473 map3k10 other downstream 27723 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 77113 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 164416 24480302 ~ 24574675 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 1000312 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 1039384 23648684 ~ 23699707 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 1056 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 293189 25043786 ~ 25079512 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 634728 25385325 ~ 25548928 (-)
G105376 NA other upstream 1488733 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1818488 26569085 ~ 26608339 (-)

Expression


Co-expression Network