siae (siae)


Basic Information

Item Value
gene id siae
gene name siae
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24767575 ~ 24776782 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914366.2
TGTCACGTGAAACTCGCGTGCTGCTGTCaacacttcctggttttgacgcTTGAGGAGCAATGCAAGCTTGGGTTCATTTCGCGGTGATTTTAAGCTGCTTTGGTGAATTATCAGTAGGTGATAACCTTCGCTTTGCATCATATTATGGAGAGCACATGGTCCTGCAGAAAGCTCCAGAGAAAGCTGTGGTGTGGGGATATGGCATAACTGGAGCTGAGGTTCAGATCTCTTTAGCAGGACCACAAAATGAACAAGTAAAATCTGTTCCTGTTCTTGATGGCATTTGGAGGGTCATTCTTGATCCGGTTCAGGTTGGTGGTCCCTATAATCTGACTGCTACTCAGAGAGGAAGCAAGATTGTACTCACAGATGTGCTGTTTGGAGATGTTTGGTTATGTGGCGGTCAGAGCAACATGGCCTTCACACTCGGTCAGGTATATAATGCCTCAGAGGAGCTGGCCATGGCCACTAAGTTCCCTAACGTGAGGGTCTTCCAGGCTGCACTGGAGATGAGCAGTGTTGAGTTGACTGACCTTGCAGGTGTGGAGGTTCCGTGGTCCCGTCCCACACCAGAGATCCTTGGAGGAAAGGATTTCACCCACTTCTCAGCCGTGTGCTGGTTGTTTGGCCGCTACCTTTACGAGAGCCTGAAATATCCGATCGGGTTGGTGGAGTCGTGTTGGGGTGGGACCCCTGTAGAGGCTTGGTCCTCCCTCAGAGCACTACACAGCTGTGGCCTCAAGGAACCTGAGAGCAGTGATGAGTGGGATAAAGAGTGGAACAGTACAGTGTTATGGAATGCCATGATCCACCCCCTGCTCAACATGACCATCAAAGGAGCCATATGGTACCAAGGTGAAGCCAACGCACAGTACAACCAGGACAAGTACTCATGCACTTTCCCAGCTATGATTGATGACTGGAGGATGGCGTTCCACGCAGGCTCAGAGGGCCAGACTGCACCAGACTTTCCGTTTGGATTTGTACAGCTGTGCACCTACAGGAAGGTCACACAAGACGGTTTTCCAGAGATTCGCTGGCACCAGACAGCAGACTACGGCTTTGCTCCAAATGAGCGCATGAAGAAAACTTTCATGGCTGTTGCTGTGGACTTACCTGACGAGTCCTCACCCTGGGGCAGCATTCACCCGCGGGATAAACAGGATGTGGCGTACAGGCTGGTGCTGGGTGCGCGAGCTGTAGCCTATGAGGAACAGGGGGTGTCTTTTCAGGGTCCTTTTCCCAGCCTGACCCTGATTAAGAACACCACCATAATCATCACTTACAATCAGAAAATAAGAGCCACGCTTTCCAGTGACACTTTTGAGATCTGCTGCTCTAAGGAGAAGAAACCTTGTACATCGGATTCCCAATGGATTCCTGCTCCAATGAAGGAACAGGGAAGTGATTACGTCCTGGTATCAATAGCTAAATGTCCCCTTGAAAATGTAGCTGCTTTGCGTTATGCGTGGAGTGACTGGCCGTGTTCTTTTAAAGCATGTCCCATCTACAGCGCAGATGGAGTCTTACCTGCACCACTGTTCATCTTTAACCGGTGGCCAACACACAGCTGATGACAAACAGTCGAAAATAGTTCctctgtacatacagtatgtggaagaAATTAAATACTTTCAATTAGACCAGTTAACAGCTGGGGACATCACAATCATGACATTTGAATGCAGGATATTTTTCTGCAAATGGGTCATCAGGGATTAAGGTATTGAGAGGGTTattagttcaaatcccagaaccgCCTAAGAGCTACATTTGGGCCTTTGATGATTCTGATGCATAGGGTTTGCTAGTGGGTAGGAATTGACACAATATTgaggagaaaaacaggaaaaagtaGCAGATAATAagcaaaacataaaatatacacaaaaatatgtgtaatgtgtaagaTATACTGAGTTTATTAGGTACTAGTATCAAATATGGCCGCACATACTGGATTGTGTTCAGAGTCGACGACTTCAGTCCAAAAGTATTTATACTGTGAAAGTTACTCGTATTCAGAGATGAGTTAAGCACATGCTCAAATCAATCTATTGGGTGTGCTATTCAGATgcaaatcacctgtgtgtggtTTATGTCTCCACAGTTGCCATTTTTTCTGGCGAACATAGGCACAAATGTGGAGTGAAGAAGGAAATAGCGTTTATTCTCTCTGCTGTAAAGCATAATAcagtgtaacataaaagcaagagataattacattttttaaaatatagtgatatatgaatgagaagatgacaagctttgaaataaacatctaatacgAGTCCAGTGTACTGCCAGTATGTttctgcatgaatagtcctagttttAATTatcactttaatttaaaaaaaaaaaaatggctcctACCTTCTTTATTTggaagcttataaaatagcacttgatccagcactgatttttttatattttgcaaaCAATTTAATGAAGCCACGAGATAccaaatcaaggtcatgaaatcataatgtgtatGCAGGATGTAGGCCATTTTAACGtgcttttaattcattattttgagttgttgaattaataaaataatgcctgTGTTTTGGTTCATTCAATGCACGTTCCTGAAAAGAaagtgtgtacaggtgttcctgttaaagtggtgAGTGTATGTGGTATTGCAGGGTACATTTGCATGTGTTGTTTGTTATTGTGAAAATTAATTCATGATGTAATCAGCAAAAGACTTCTTCTCAGTATGAGTTAGTAGGAGGAAGTGAGTATAGGGCATTAAGCTCAATCAGATCTGTTTTTTGTACAatttagcaaatgaaaaaagtaaGCCAAATGAGAAATGCACTTTAGGTGTATATGCTGCTACTCTATGATTAACCAGCAGGTGGGAATATTGGCAAAGCATGCAGACAAGGTTGCATGTCTACGAATTTCTACAAATTGCTACAAATGTCTACAAATTGCTAAGGTGTACATACATAGTGGTTAATCAGTTTaccattttttacatatttgcactcatttttctttaattttctacAATTGACAagtaaacaacaaaacaaattattgtctgtaacaagacaataaatgtataagtatcatttattactaaaatatGAGTTTTCAAAAAACTAATTTAATATTCTTGTTATGATTCACAAATACTGACTGTGTCATGTTGGCTTGCTTTTCACACTAATGAACAAACACTAATAAAGCACTCAGATTTACCAAA

Function

symbol description
siae Predicted to enable sialate O-acetylesterase activity. Is expressed in heart; liver; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autoimmune disease. Orthologous to human SIAE (sialic acid acetylesterase).

NR:

description
sialate O-acetylesterase

GO: NA

KEGG:

id description
K05970 SIAE; sialate O-acetylesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914366.2 True 3223 mRNA 0.42 11 24767575 24776782

Neighbor

gene id symbol gene type direction distance location
znf296 LOC108264426 coding downstream 16978 24739091 ~ 24750597 (-)
capn12 LOC108264620,LOC108433431 coding downstream 40553 24705004 ~ 24727022 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding downstream 81325 24680767 ~ 24686250 (-)
c6h19orf47 c4h19orf47 coding downstream 92719 24667061 ~ 24674856 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding downstream 289603 24469967 ~ 24477972 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding upstream 248035 25024817 ~ 25034882 (-)
ppp1r13l ppp1r13l coding upstream 329647 25106429 ~ 25135256 (-)
rasgrp4 LOC108264291,LOC108428524 coding upstream 378400 25155182 ~ 25182107 (-)
LOC117597607 NA coding upstream 518676 25295458 ~ 25301413 (-)
LOC113526534 NA coding upstream 527954 25304736 ~ 25319693 (-)
G104320 NA non-coding downstream 233156 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 302997 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 1191896 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1254247 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1437474 23329676 ~ 23330101 (-)
G104694 hnrnpul1 non-coding upstream 337195 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 415275 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 462328 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 466690 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 1056497 25833279 ~ 25836038 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 3414 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 56207 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 105597 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 192900 24480302 ~ 24574675 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 1028796 23732870 ~ 23738779 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 267004 25043786 ~ 25079512 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 608543 25385325 ~ 25548928 (-)
G105376 NA other upstream 1462548 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1792303 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 2368106 27144888 ~ 27160099 (-)

Expression


Co-expression Network